View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_6 (Length: 595)
Name: NF18645_low_6
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_6 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 5823287 - 5822841
Alignment:
| Q |
1 |
ttcagggtcaggtttcaatattttggacatgcattctttgattgaagggtctgtgactttagggtttagggttccagtggagatgtcatgagctaattgg |
100 |
Q |
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| T |
5823287 |
ttcagggtcaggtttcaatattttggacatgcattctttgattgaagggtctgtgattttagggtttagggttccagtggagatgtcatgagctaattgg |
5823188 |
T |
|
| Q |
101 |
gcccaattaagttgaaggaattttatggctcttaaaagcccagaagcaaaaatagctccaactcttagaacttcatggcgcatgatgaggccacatagca |
200 |
Q |
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| T |
5823187 |
gcccaattaagttgaaggaattttatggctcttaaaagcccagaagcaaaaatagctccaactcttagaacttcatggcgcatgataaggccacatagca |
5823088 |
T |
|
| Q |
201 |
tctgagtgtacatgctttggaatgaatctaaacatgagatggcttcatttgggcttgttagaacattgtaagggccaaatggtcttttcatgaattgttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5823087 |
tctgagtgtacatgctttggaatgaatctaaacatgagatggcttcatttgggcttgttagaacattgtaagggtcaaatggtcttttcatgaattgtt- |
5822989 |
T |
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| Q |
301 |
acttttgtagatggctgtggtaactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgccttacccttgtcc |
400 |
Q |
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| T |
5822988 |
tct----------gctttgataactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgccttacccttgtcc |
5822899 |
T |
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| Q |
401 |
aaattaggcacgtacct-----atttcatccaaattaagaaatgttatttgataaaat |
453 |
Q |
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| T |
5822898 |
aaattaggcacatacctaattcaattcaaccaaattaagaaatgttagttgataaaat |
5822841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 5832797 - 5833182
Alignment:
| Q |
19 |
tattttggacatgcattctttgattgaagggtctgtgactttagggtttagggttccagtggagatgtcatgagctaattgggcccaattaagttgaagg |
118 |
Q |
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| T |
5832797 |
tattttcgacatgcactgtttgatagaaggatcagtgatttttgggtttagggttcctgtttcaatgtcatggactaattcagcccaattcagctgaagg |
5832896 |
T |
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| Q |
119 |
aattttatggctcttaaaagcccagaagcaaaaatagctccaactcttagaacttcatggcgcatgatgaggccacatagcatctgagtgtacatgcttt |
218 |
Q |
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|| | |||||||| | |||||| ||||| |||| ||||| |||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
5832897 |
aacctaatggctctgagaagcccggaagcgaaaactgctccgactcgaagaacttcatggcgcatgattaggccacaaagcatctgagtatacatgcttt |
5832996 |
T |
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| Q |
219 |
ggaatgaatctaaacatgagatggcttcatttgggcttgttagaacattgtaagggccaaatggtcttttcatgaattgttcacttttgtagatggctgt |
318 |
Q |
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| T |
5832997 |
gaaatgaatcaggacaaaggatagcttcatctggacttgttaacacattgtaagggtcaaatggtcttttcttaaactgttcacttttgtagtaggctgt |
5833096 |
T |
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| Q |
319 |
ggtaactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgccttacccttgtccaaat |
404 |
Q |
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| T |
5833097 |
tagaactggacgtgccactaacccacttggagtttttgtttctgctttgatgaaaagaaagtgaagtgcttttcctttgtccaaat |
5833182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 518 - 582
Target Start/End: Original strand, 16256614 - 16256678
Alignment:
| Q |
518 |
aagtttggatggaggtgatgaattggatgcaattcaattttataactcctcctaatttgattatt |
582 |
Q |
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| T |
16256614 |
aagtttagagggaggtgatgaattggatacaattcaattttattactcctcctgatttgattatt |
16256678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 77870 - 77830
Alignment:
| Q |
185 |
atgaggccacatagcatctgagtgtacatgctttggaatga |
225 |
Q |
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| T |
77870 |
atgagtccacatagcatttgagtatacatgctttggaatga |
77830 |
T |
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