View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18645_low_9 (Length: 512)

Name: NF18645_low_9
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18645_low_9
NF18645_low_9
[»] chr6 (27 HSPs)
chr6 (5-356)||(5433775-5434126)
chr6 (5-361)||(5447322-5447678)
chr6 (8-357)||(5128410-5128759)
chr6 (5-363)||(5278299-5278657)
chr6 (5-363)||(5176472-5176830)
chr6 (15-365)||(5446888-5447238)
chr6 (5-363)||(5690149-5690507)
chr6 (8-356)||(5096448-5096796)
chr6 (8-363)||(5383059-5383414)
chr6 (5-363)||(5284379-5284737)
chr6 (15-361)||(5344596-5344942)
chr6 (5-356)||(5102604-5102955)
chr6 (8-363)||(5354607-5354962)
chr6 (5-363)||(5257324-5257682)
chr6 (5-348)||(5073898-5074241)
chr6 (8-356)||(5157621-5157969)
chr6 (10-356)||(5066689-5067035)
chr6 (1-361)||(5181913-5182273)
chr6 (11-356)||(5370311-5370656)
chr6 (8-356)||(5425650-5425998)
chr6 (10-333)||(5350159-5350480)
chr6 (1-363)||(5396683-5397045)
chr6 (123-358)||(5147004-5147239)
chr6 (71-330)||(5243923-5244182)
chr6 (15-116)||(5179521-5179622)
chr6 (389-455)||(5433556-5433622)
chr6 (8-116)||(5281280-5281388)
[»] chr4 (20 HSPs)
chr4 (15-355)||(4344387-4344727)
chr4 (5-363)||(4123929-4124287)
chr4 (21-363)||(4360810-4361152)
chr4 (21-354)||(4335087-4335420)
chr4 (21-351)||(4320625-4320955)
chr4 (5-361)||(4133415-4133769)
chr4 (232-351)||(6772849-6772968)
chr4 (232-339)||(6815227-6815334)
chr4 (232-354)||(6498743-6498865)
chr4 (232-360)||(6758460-6758588)
chr4 (176-360)||(6837010-6837194)
chr4 (232-330)||(6752726-6752824)
chr4 (175-360)||(6715503-6715688)
chr4 (233-293)||(6650870-6650930)
chr4 (232-339)||(6675460-6675567)
chr4 (175-293)||(6532392-6532510)
chr4 (232-330)||(6728172-6728270)
chr4 (41-342)||(7885417-7885718)
chr4 (175-293)||(6796590-6796708)
chr4 (232-293)||(6545665-6545726)
[»] chr3 (6 HSPs)
chr3 (5-357)||(47986842-47987194)
chr3 (5-357)||(47996129-47996481)
chr3 (5-357)||(48005416-48005768)
chr3 (5-357)||(48014701-48015053)
chr3 (71-151)||(32411256-32411336)
chr3 (74-119)||(6905985-6906030)
[»] scaffold0294 (1 HSPs)
scaffold0294 (5-363)||(8890-9248)
[»] chr5 (4 HSPs)
chr5 (8-361)||(8877344-8877697)
chr5 (71-119)||(20812254-20812302)
chr5 (71-119)||(20838609-20838657)
chr5 (80-119)||(15802888-15802927)
[»] chr7 (3 HSPs)
chr7 (5-361)||(36213819-36214175)
chr7 (71-333)||(34724642-34724904)
chr7 (131-326)||(18935156-18935351)
[»] chr2 (2 HSPs)
chr2 (5-150)||(22584204-22584349)
chr2 (71-129)||(14767123-14767181)
[»] scaffold0552 (1 HSPs)
scaffold0552 (232-339)||(8502-8609)
[»] scaffold0373 (1 HSPs)
scaffold0373 (176-360)||(9426-9610)
[»] chr8 (12 HSPs)
chr8 (71-211)||(3286691-3286831)
chr8 (71-153)||(3262802-3262884)
chr8 (71-119)||(3398696-3398744)
chr8 (71-138)||(13808663-13808730)
chr8 (71-116)||(3364149-3364194)
chr8 (71-116)||(3391712-3391757)
chr8 (71-132)||(7164828-7164889)
chr8 (71-191)||(3267374-3267494)
chr8 (71-119)||(3314835-3314883)
chr8 (71-119)||(3407499-3407547)
chr8 (71-119)||(31175824-31175872)
chr8 (71-121)||(3375053-3375103)
[»] scaffold0813 (1 HSPs)
scaffold0813 (233-293)||(5044-5104)
[»] scaffold0286 (1 HSPs)
scaffold0286 (233-293)||(6462-6522)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 5434126 - 5433775
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| |||| ||    
T  5434126 ggcactctttttattgcagtgttatttgcaagcagagtggttaaagattccatatgttccaagtcatcttccaaattgtcaatctttaaacagccagtaa 5434027  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    | ||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  5434026 ggatgagagttttcaaagatttcaacttatatatgcttcttgggaggttacataggccaatacaatcttccaaatttatcagaagaatttcattgagatg 5433927  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||| |||||||||||||| |||||||| ||||||    
T  5433926 gccaatgctaggagaaatctcagaaagacttggacaatctgtgagtactaacttttcaagattaggcaaatttgaaaagtctggtgtttgtgtcagataa 5433827  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaaca 356  Q
    ||| ||||||| || || ||||||||||| |||||||  |||||||||||||    
T  5433826 tgacaatgactaaggttaagaattttcagcttctccattctctgcaagaaca 5433775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 5 - 361
Target Start/End: Complemental strand, 5447678 - 5447322
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    |||||| || |||||| ||| |||||||| ||||||||||||||||||||||| | ||| || || |||||||  |||||||||||||||||||||||||    
T  5447678 ggcactgttgttattgaagtattatttgcaagcagagtggttaaagattccatctgttccaagtcctcttccagcttgtcaatctttaaacaaccagaaa 5447579  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||||||||||||| ||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  5447578 gaatgagagttttcaaagatttcaacttatagatgcttcttgggaggttacctaggccaatacaatcttccaaatttatcagaagaattttattgagatg 5447479  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    ||||||||||||||||| |||||| |   ||||||||||||||||||| ||||||||||||| |||||||  ||||||||| ||| | | ||| |||  |    
T  5447478 tccaatgctaggagaaacctcagacaacattggacaatctttgagtactagcttttcaagattaggcaagcatgaaaagtccgggatgtttgtcagacga 5447379  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaat 361  Q
    ||||||||||| ||||||||| ||||||| || |||| |||||||||||||| ||||    
T  5447378 tgagaatgactaagattgagatttttcagattttccatcctctgcaagaacaaaaat 5447322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 5128410 - 5128759
Alignment:
Q  8 actctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaa 107  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| | ||| || || |||||||| ||||||||| ||| ||||||||||||||    
T  5128410 actctttttattgcagtgttatttgcaagcagagttgttaatgattccatttgttccaagtcctcttccaacttgtcaatcattatacaaccagaaagaa 5128509  T
Q  108 tgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtcc 207  Q
    |||||||||||||| ||||||||||||| |||||| |||||||  ||||||||| | | ||||||||||||| |||||||||||||||||||||||||||    
T  5128510 tgagagttttcaaagatttcaacttatagatgcttcttgggaggctacataggctaatgcaatcttccaaatttatcagaagaattttattgagatgtcc 5128609  T
Q  208 aatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatga 307  Q
     ||||||| ||||| |||||| |   ||| ||||||||||||||| ||||||||||||| ||| || | ||||||||||||||| ||||| ||| |||||    
T  5128610 gatgctagtagaaacctcagacaacattgaacaatctttgagtactagcttttcaagattaggtaaatatgaaaagtctggggtgtgtgtcagacaatga 5128709  T
Q  308 gaatgacttagattgagaattttcagtttctccagcctctgcaagaacat 357  Q
    ||||||||  |||||||||||||||| ||||||| | |||||||||||||    
T  5128710 gaatgactatgattgagaattttcagcttctccatcatctgcaagaacat 5128759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 5 - 363
Target Start/End: Complemental strand, 5278657 - 5278299
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||||||| | ||| || || |||||||| ||||||||| |  |||| |||||||    
T  5278657 ggcactcttgttattgcagtgttatttgcaagcagagtagttaaagattccatttgttccaagtcctcttccaacttgtcaatcatcgaacacccagaaa 5278558  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||| ||||||||| ||||||||||||| || ||| |||| ||| |    |||| | ||||||||||||| | ||||||||||||||||| |||||     
T  5278557 gaatgagtgttttcaaagatttcaacttatagatacttcttggaagactctgaaggctaatacaatcttccaagtttatcagaagaattttatcgagata 5278458  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    |||||||||| |||||| |||| | |  ||||| |||||| ||||||  ||||||||||||| ||||| |||||||||||||||||| | ||| ||||||    
T  5278457 tccaatgctatgagaaacctcacacaaccttgggcaatctatgagtataagcttttcaagattaggcatgtttgaaaagtctggggtctctgtcagataa 5278358  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
    ||||||||||| ||||| ||||||||||| ||||||| |||||||||||||| ||||||    
T  5278357 tgagaatgactaagattaagaattttcagcttctccatcctctgcaagaacaaaaatat 5278299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 5 - 363
Target Start/End: Complemental strand, 5176830 - 5176472
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||||||| | ||| || || |||||||| ||||||||| |  |||| |||||||    
T  5176830 ggcactcttgttattgcagtgttatttgcaagcagagtagttaaagattccatttgttccaagtcctcttccaacttgtcaatcatcgaacacccagaaa 5176731  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||| ||||||||| ||||||||||||| || ||| |||| ||| |    |||| | ||||||||||||| | ||||||||||||||||| ||||||    
T  5176730 gaatgagtgttttcaaagatttcaacttatagatacttcttggaagactctgaaggctaatacaatcttccaagtttatcagaagaattttatcgagatg 5176631  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    |||||||||| | |||| ||||   |  ||||| |||||| ||||||  ||||||||||||| ||||| |||||||||||||||||| | ||| ||||||    
T  5176630 tccaatgctatgggaaacctcacgcaaccttgggcaatctatgagtataagcttttcaagattaggcatgtttgaaaagtctggggtctctgtcagataa 5176531  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
    ||||||||||| ||||| ||||||||||| ||||||| |||||||||||||| ||||||    
T  5176530 tgagaatgactaagattaagaattttcagcttctccatcctctgcaagaacaaaaatat 5176472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 5447238 - 5446888
Alignment:
Q  15 ttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatgagagt 114  Q
    |||||| |||||||||||| || |||||||||||||||||||| |  || || || |||||||  |||||||||||||||||||||||||||| ||||||    
T  5447238 ttattgaagtgttatttgcaagaagagtggttaaagattccattttctcgaagtcctcttccaccttgtcaatctttaaacaaccagaaagaacgagagt 5447139  T
Q  115 tttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaatgcta 214  Q
    ||||||| ||||||||||||| ||||||||||||||  ||||||||| | | || |||||||| | ||||||||||||||||||||||||||  ||||||    
T  5447138 tttcaaagatttcaacttatagatgctttttgggaggctacataggctaatgcagtcttccaagtttatcagaagaattttattgagatgtctgatgcta 5447039  T
Q  215 ggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgac 314  Q
    || |||| |||||| |    ||| |||||||||||||| || |||| ||||| ||||  |||||||||||| ||| ||||||| ||||| || ||||| |    
T  5447038 ggtgaaacctcagacaacagtgggcaatctttgagtactagtttttgaagattaggcgtgtttgaaaagtcagggctttgtgtgagatagtgcgaatggc 5446939  T
Q  315 ttagattgagaattttcagtttctccagcctctgcaagaacataaatatat 365  Q
    | |||||||||||||| || ||||||| |||||||||||||| ||| ||||    
T  5446938 taagattgagaatttttagcttctccatcctctgcaagaacaaaaaaatat 5446888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 5690149 - 5690507
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||| ||| ||||| |||||| |||||| ||||||||||||||||||||||| | ||| || || |||||||| |||| |||| || |||| || ||||    
T  5690149 ggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaa 5690248  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||||||||||| | ||||||||||||| |||||| |||| || ||| | |||| | ||||||||||||||| ||||||||||||||| | ||||||    
T  5690249 gaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttccaaatttatcagaagaattttgtcgagatg 5690348  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    |||||||||| | |||| ||||   |  |||||||||||||||||||  ||||||||||||| ||||| | |||||||||||||||| ||||| ||||||    
T  5690349 tccaatgctatgggaaacctcacgcaaccttggacaatctttgagtattagcttttcaagattaggcatgattgaaaagtctggggtctgtgtcagataa 5690448  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
    ||||| ||||| |||||||||||||| || ||||||| | ||| |||||| ||||||||    
T  5690449 tgagagtgactaagattgagaattttaagcttctccatcatctacaagaatataaatat 5690507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 5096796 - 5096448
Alignment:
Q  8 actctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaa 107  Q
    |||||||||||| ||||||||||||| |||||| ||||||| |||||||| | ||| |  || |||||||| | ||||||| ||| ||| ||||||||||    
T  5096796 actctttttattccagtgttatttgcaagcagaatggttaatgattccatttgttctatgtcctcttccaactcgtcaatcattatacacccagaaagaa 5096697  T
Q  108 tgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtcc 207  Q
    |||||||||||| | ||||||||||||| ||||||  ||| ||  |||  |||| |  |||||||||||||||||| |||||||||| | |||||| |||    
T  5096696 tgagagttttcagagatttcaacttatagatgcttcctggaaggctacgaaggctaacacaatcttccaaatctattagaagaatttcactgagatttcc 5096597  T
Q  208 aatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatga 307  Q
    |||||||||||||| |||||| |   ||||||||||||| ||||| ||||| ||||||| ||||| || ||||||||||||||| ||||| ||| |||||    
T  5096596 aatgctaggagaaacctcagacaacattggacaatctttaagtaccagcttctcaagattaggcatgtatgaaaagtctggggtgtgtgtcagacaatga 5096497  T
Q  308 gaatgacttagattgagaattttcagtttctccagcctctgcaagaaca 356  Q
    |||||||| ||||| |||||||||||||| |||| ||||||||||||||    
T  5096496 gaatgactaagatttagaattttcagtttttccatcctctgcaagaaca 5096448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 5383414 - 5383059
Alignment:
Q  8 actctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaa 107  Q
    |||||| ||||||||||||||| ||| |||| ||| |||||||||||||| | ||| |  || |||||||| |||  |||||||||||||||||||||||    
T  5383414 actcttgttattgcagtgttatctgcaagcaaagtagttaaagattccatttgttctatgtcctcttccaacttggtaatctttaaacaaccagaaagaa 5383315  T
Q  108 tgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtcc 207  Q
    |||||||||||| | ||||||||||||| |||||| |||||||  ||||||||| |  ||| ||||||||||  |||||||||||||| ||||||| |||    
T  5383314 tgagagttttcagagatttcaacttataaatgcttcttgggaggctacataggctaacacagtcttccaaattaatcagaagaattttcttgagatctcc 5383215  T
Q  208 aatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatga 307  Q
    |||||||||||||| ||| || |  || |||||||||  |||||| ||||||||||||| |||||| ||||| ||||||||||| ||    || ||||||    
T  5383214 aatgctaggagaaacctcggacaacctcggacaatctgcgagtactagcttttcaagattaggcaaatttgagaagtctggggtctgcaccaggtaatga 5383115  T
Q  308 gaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
    |||||||| || || || ||||||||| |||||| |||||||||||||||||||||    
T  5383114 gaatgactaaggtttaggattttcagtatctccatcctctgcaagaacataaatat 5383059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 5284379 - 5284737
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| ||||||| |||||||| || | ||||||||||||||||  ||| | ||| || || |||||||| ||||||||| || |||| ||| |||    
T  5284379 ggcactcttgttattgcggtgttattagctatcagagtggttaaagatgtcatctgttctaagtcctcttccaacttgtcaatcattgaacacccaaaaa 5284478  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    |||||| |||||| | | ||||||||||||| ||||||  ||||||  |||||| || | ||||| |||| |||| ||||| |  ||||||||||||||     
T  5284479 gaatgaaagtttttagagatttcaacttatagatgcttcgtgggaggctacataagctaatacaaccttcaaaatttatcaaagcaattttattgagatt 5284578  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    |||||||||||| |||| |||||| || ||||||||||||||||| || ||||||||||||| ||||| ||| |||||||| ||| || |||| ||||||    
T  5284579 tccaatgctaggtgaaacctcagatagccttggacaatctttgagcactagcttttcaagattaggcatgttcgaaaagtcagggcttcgtgtgagataa 5284678  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
    || |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  5284679 tgggaatgactaagattgagaattttcagcttctccatcctctgcaagaacataaatat 5284737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 15 - 361
Target Start/End: Complemental strand, 5344942 - 5344596
Alignment:
Q  15 ttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatgagagt 114  Q
    ||||||||||||||||||| | |||| |||||||||||| ||| | ||| || || |||||||| |||||||||||||||||||| ||||||||||||||    
T  5344942 ttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagt 5344843  T
Q  115 tttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaatgcta 214  Q
    ||| | | | ||||||||||| |||||| |||| ||  ||||||||| | |||| ||||||||||  || ||||||||||| ||||||| ||||||||||    
T  5344842 ttttagagaattcaacttatagatgcttcttggcaggctacataggctaatacagtcttccaaattaatgagaagaattttcttgagatctccaatgcta 5344743  T
Q  215 ggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgac 314  Q
     ||||||||||| | | ||||||||||||   |||||| | ||||||||||| ||| ||||  |||||||| ||||||||| | || |||||||||||||    
T  5344742 tgagaaatctcacacaaacttggacaatccacgagtactaacttttcaagattaggtaagtaagaaaagtccggggtttgtatcaggtaatgagaatgac 5344643  T
Q  315 ttagattgagaattttcagtttctccagcctctgcaagaacataaat 361  Q
    | ||||||||||||||||| ||||||| | |||| ||||||||||||    
T  5344642 taagattgagaattttcagcttctccatcatctgtaagaacataaat 5344596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 5 - 356
Target Start/End: Original strand, 5102604 - 5102955
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    |||||| || ||||||||||||| ||||| || ||||||||||| |||||||| | ||| || || |||||||| ||||||||| ||||||| |||||||    
T  5102604 ggcactgttgttattgcagtgttgtttgctagaagagtggttaatgattccatttgttccaagtcgtcttccaacttgtcaatcattaaacacccagaaa 5102703  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    |||||||  |||||||| ||||||||||||| |||||| |||| ||  |||  |||| |  |||||||||||||||||| ||||| |||| | ||||||     
T  5102704 gaatgagtattttcaaagatttcaacttatagatgcttcttggaaggctacgaaggctaacacaatcttccaaatctattagaagtatttcagtgagatc 5102803  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    ||||||| ||||| ||| |||||| |   ||||||||||||||||||| ||||| ||||||| |||||||| ||||||||| ||||| || || ||| ||    
T  5102804 tccaatggtaggacaaacctcagacaacattggacaatctttgagtaccagcttctcaagattaggcaagtatgaaaagtcaggggtgtgcgtcagacaa 5102903  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaaca 356  Q
    ||||||||||| ||||| ||||||||||| || |||| ||||||||||||||    
T  5102904 tgagaatgactaagatttagaattttcagcttttccaacctctgcaagaaca 5102955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 5354607 - 5354962
Alignment:
Q  8 actctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaa 107  Q
    |||||| |||||||||||| |||||| ||||| ||||||||||||||||  | ||| || || |||||||| ||||| | ||||  ||||||||||||||    
T  5354607 actcttgttattgcagtgtcatttgcaagcagggtggttaaagattccaattgttccaagtcctcttccaacttgtctaactttttacaaccagaaagaa 5354706  T
Q  108 tgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtcc 207  Q
    |||||||||||||| |||||||||| || |||||| |||||||  || | |||  | | || ||||  |||| |||||||||||||||||||||||||||    
T  5354707 tgagagttttcaaagatttcaacttgtagatgcttcttgggaggctagaaaggttaatgcagtctttgaaatttatcagaagaattttattgagatgtcc 5354806  T
Q  208 aatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatga 307  Q
    |||||| |||||||  ||||| |   ||||||||||||||||||| ||||||||||||| ||||| ||  |||||||| ||||| ||||| ||| ||||     
T  5354807 aatgcttggagaaacttcagataacattggacaatctttgagtacaagcttttcaagattaggcatgtaagaaaagtcaggggtatgtgtcagacaatgt 5354906  T
Q  308 gaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
    |||||||| ||||||||||||||||| | |||||  ||||||||||||||| ||||    
T  5354907 gaatgactaagattgagaattttcagatgctccattctctgcaagaacatacatat 5354962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 5257324 - 5257682
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| ||||||||||||||||||| |  |||||||||||||||  ||| | ||| || || |||||||| ||||||||| || |||| |||||||    
T  5257324 ggcactcttgttattgcagtgttatttgcaattagagtggttaaagatgtcatctgttctaagtcctcttccaacttgtcaatcattgaacacccagaaa 5257423  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    |||||| |||||| | | ||||||||||||| |||||| ||||||| |  |||| || | ||||||||||||||| ||||| || |||||| |||||||     
T  5257424 gaatgaaagtttttagagatttcaacttatagatgcttcttgggagttcgcataagctaatacaatcttccaaatttatcaaaacaattttcttgagatt 5257523  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    ||||||||| | ||||| |  ||| ||  ||||||||||||||||||| | ||||||||||| ||||| ||| |||||||| ||| ||  ||| ||| ||    
T  5257524 tccaatgcttgaagaaaccctagatagcattggacaatctttgagtactaacttttcaagattaggcatgttggaaaagtcagggcttcttgtgagacaa 5257623  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
     | |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  5257624 cgggaatgactaagattgagaattttcagcttctccatcctctgcaagaacataaatat 5257682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 5 - 348
Target Start/End: Original strand, 5073898 - 5074241
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| ||||||| ||||||||||| | ||||||||||||||||  ||| | ||| || || |||||||| ||||||||| || |||| || ||||    
T  5073898 ggcactcttgttattgcggtgttatttgctatcagagtggttaaagatgtcatctgttctaagtcctcttccaacttgtcaatcattgaacacccggaaa 5073997  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||||||||| | | ||||||||||||| || ||| |||| ||  |    || ||| ||||||||||||||| ||||||||||||||||||||||||    
T  5073998 gaatgagagtttttagagatttcaacttatagatacttcttggaaggctctgaagaccaatacaatcttccaaatttatcagaagaattttattgagatg 5074097  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    | |||| ||| |||||| ||| || |  |||||||||||| ||||||| || | |||||||| ||||||||||||||| ||||| ||||| || ||||||    
T  5074098 ttcaatactatgagaaacctctgacaaccttggacaatctgtgagtactagttgttcaagattaggcaagtttgaaaaatctggagtttgcgtcagataa 5074197  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctg 348  Q
    ||||||||||| |||||||| |||||||| ||||||| ||||||    
T  5074198 tgagaatgactaagattgagtattttcagcttctccaacctctg 5074241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 5157621 - 5157969
Alignment:
Q  8 actctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaa 107  Q
    |||||||||||||||||||  | ||| ||||||||||||||||||||||| | ||| |  || |||||||| ||||||||| ||| ||| || |||||||    
T  5157621 actctttttattgcagtgtcgtgtgcaagcagagtggttaaagattccatctgttctatgtcctcttccaacttgtcaatcattatacaccctgaaagaa 5157720  T
Q  108 tgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtcc 207  Q
    | | | |||||| | ||||||||||||| |||||| |||| ||  | |  |||| |  |||||||||||||||||| |||||||||| | |||||| |||    
T  5157721 ttaaaattttcagagatttcaacttatagatgcttcttggaaggcttcgaaggctaacacaatcttccaaatctattagaagaatttcactgagatttcc 5157820  T
Q  208 aatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatga 307  Q
    |||||||||||||| |||||| |   ||||||||||||||||||| ||||| ||||||| ||||| || ||||||||||||||| || || ||| |||||    
T  5157821 aatgctaggagaaacctcagacaacattggacaatctttgagtaccagcttctcaagattaggcatgtatgaaaagtctggggtgtgcgtcagacaatga 5157920  T
Q  308 gaatgacttagattgagaattttcagtttctccagcctctgcaagaaca 356  Q
    |||||||| ||||| |||||||| || || |||| | ||||||||||||    
T  5157921 gaatgactaagatttagaatttttagcttttccatcatctgcaagaaca 5157969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 5066689 - 5067035
Alignment:
Q  10 tctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatg 109  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||||||| | ||| |  || ||||| || ||||||||| ||| ||| ||||||||||||    
T  5066689 tctttttattgcagttttatgtgcaagcagagtggttaaagattccatttgttctatgtcctcttctaacttgtcaatcattatacacccagaaagaatg 5066788  T
Q  110 agagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaa 209  Q
    |||||||| | | ||||||||||||| |||||| |||| || ||||  |||| |  |||||||||||||||||| |||||||||| | |||| | ||| |    
T  5066789 agagttttaagagatttcaacttatagatgcttcttggaaggttacgaaggctaacacaatcttccaaatctattagaagaatttcactgagttttccta 5066888  T
Q  210 tgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgaga 309  Q
    |  ||||||||| ||| || |   ||||||||||||||||||| ||||||||||||| |||||  | ||||||||| ||||| ||  | ||| |||||||    
T  5066889 ttgtaggagaaacctcggacaatattggacaatctttgagtactagcttttcaagattaggcatatatgaaaagtcaggggtgtgcatcagacaatgaga 5066988  T
Q  310 atgacttagattgagaattttcagtttctccagcctctgcaagaaca 356  Q
    ||| || ||||| ||||||||||| || |||| ||||||||||||||    
T  5066989 atggctaagatttagaattttcagcttttccatcctctgcaagaaca 5067035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 5181913 - 5182273
Alignment:
Q  1 aaacggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaacca 100  Q
    ||||||||||||| ||||||||||||||||||| | ||  ||||||||||||| ||| | ||| || || |||||||| ||||||||| ||||||| |||    
T  5181913 aaacggcactcttgttattgcagtgttatttgcaatcaatgtggttaaagatttcatttgttccaaatcctcttccaacttgtcaatcattaaacaccca 5182012  T
Q  101 gaaagaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattga 200  Q
    |||||||||||||| || ||  ||||||| ||||| |||||| |||| ||  |    |||| | | ||||||||||||| ||||| ||| ||||||||||    
T  5182013 gaaagaatgagagtgtttaatgatttcaaattatagatgcttcttggaaggctttgaaggctaatgcaatcttccaaatttatcaaaagtattttattga 5182112  T
Q  201 gatgtccaatgctaggagaaatctcagaaagactt-ggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgtta 299  Q
    ||| |||||| ||  | ||||  ||||| | |||| ||||||||| ||||||| | || |||||| | ||||||||||||||||||||| || | ||  |    
T  5182113 gatctccaatactttgggaaacttcagaca-acttcggacaatctgtgagtactaactgttcaaggttaggcaagtttgaaaagtctggagtctttgaca 5182211  T
Q  300 gataatgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaat 361  Q
    || ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||    
T  5182212 gaaaatgagaatgactaagattgagaattttcagcttctccagcctctgcaagaacagaaat 5182273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 5370656 - 5370311
Alignment:
Q  11 ctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatga 110  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| | ||| |  || |||||||| || |||||| ||| ||| || |||||||| |    
T  5370656 ctttttattgcagtgttatttgcaagcagagtggttaatgattccatctgttctatatcctcttccaacttctcaatcattacacaccctgaaagaataa 5370557  T
Q  111 gagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaat 210  Q
    |||| || | | ||||||||||||| |||||| |||| || ||||  |||| |  ||||||||| |||||||| ||||||||||    |||||  |||||    
T  5370556 gagtctttagagatttcaacttataaatgcttcttggaaggttacgaaggctaacacaatcttcaaaatctattagaagaatttcgccgagattcccaat 5370457  T
Q  211 gctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaa 310  Q
    ||||||||||| |||||| ||  ||| ||||||||||||||| | ||||||||| | |||||||| ||||||||||||||| || || ||| ||||||||    
T  5370456 gctaggagaaacctcagacagcattgaacaatctttgagtactaacttttcaagcttaggcaagtatgaaaagtctggggtgtgcgtcagacaatgagaa 5370357  T
Q  311 tgacttagattgagaattttcagtttctccagcctctgcaagaaca 356  Q
    ||||| ||||| |||||||| || || |||| | ||||||||||||    
T  5370356 tgactaagatttagaatttttagcttttccatcatctgcaagaaca 5370311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 5425998 - 5425650
Alignment:
Q  8 actctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaa 107  Q
    ||||||||||||||||| |||| ||| | ||||||||||||||||||||| | ||| |  || |||||||| ||||||||| ||| ||| ||||||||||    
T  5425998 actctttttattgcagttttatgtgcaatcagagtggttaaagattccatttgttctatgtcctcttccaacttgtcaatcattacacacccagaaagaa 5425899  T
Q  108 tgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtcc 207  Q
    |||||||||||| | ||||||||||||| ||| || |||| ||  |    |||| |  ||||||||| |||| ||| ||||||||||   |||||| |||    
T  5425898 tgagagttttcagagatttcaacttatagatgtttcttggaaggctttgaaggcgaacacaatcttctaaatttattagaagaatttctctgagatttcc 5425799  T
Q  208 aatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatga 307  Q
    ||||||||||||||||||||| |   |||||||||||||||| || ||||||||||||| ||||| |  || |||||| |||||  | || ||| |||||    
T  5425798 aatgctaggagaaatctcagacaacattggacaatctttgagcaccagcttttcaagattaggcatgaatgtaaagtcaggggtgcgcgtcagacaatga 5425699  T
Q  308 gaatgacttagattgagaattttcagtttctccagcctctgcaagaaca 356  Q
    |||||||| ||||| ||||||||||| || |||| || |||||| ||||    
T  5425698 gaatgactaagatttagaattttcagcttttccatccactgcaaaaaca 5425650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 5350480 - 5350159
Alignment:
Q  10 tctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatg 109  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||||||| | ||| |  || |||||||| ||||||||| ||| ||| || |||||||||    
T  5350480 tctttttattgcagttttatgtgcaagcagagtggttaaagattccatttgttctatgtcctcttccaacttgtcaatcattatacaccctgaaagaatg 5350381  T
Q  110 agagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaa 209  Q
    |||||||| | | ||||||||||| | |||||| |||| ||  |    |||| |  |||||| ||||||||||| |||||||||| | |||||| |||||    
T  5350380 agagttttgagagatttcaacttaaagatgcttcttggaaggctttgaaggctaacacaatcctccaaatctattagaagaatttcactgagatctccaa 5350281  T
Q  210 tgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgaga 309  Q
    |||||||||||| ||| || |   ||||||||||||||||||| ||||||||||||| ||||| || |||||||||  |||| ||||| ||| ||  |||    
T  5350280 tgctaggagaaacctcggacaacattggacaatctttgagtactagcttttcaagattaggcatgtatgaaaagtc--gggtgtgtgtcagacaacaaga 5350183  T
Q  310 atgacttagattgagaattttcag 333  Q
    |||||| ||||| |||||||||||    
T  5350182 atgactaagatttagaattttcag 5350159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 5397045 - 5396683
Alignment:
Q  1 aaacggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaacca 100  Q
    ||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||| | ||| || || |||||||| |||||||||  |||||| |||    
T  5397045 aaacggcactctttttattgcagtgttatttgcaaccaaggtggttaaagattccatctgttccaaatcttcttccaatttgtcaatcagtaaacaccca 5396946  T
Q  101 gaaagaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattga 200  Q
    |||||||  |||||||  |   ||||||||||||| || ||| |||| ||  |    ||   | ||||||  ||||||| ||| ||||| ||||| || |    
T  5396945 gaaagaagaagagtttgtagtgatttcaacttataaatacttcttggaaggctttgaagcttaatacaattctccaaatttattagaagtatttttttca 5396846  T
Q  201 gatgtccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttag 300  Q
    ||| ||||||  || | ||||  || || |   ||||||||||  ||| ||| || | |||||||| ||||| |||||||||||||||||| ||||| |     
T  5396845 gatctccaatattatgggaaacttctgacaactttggacaatcagtgactactagttgttcaagattaggcatgtttgaaaagtctggggtctgtgtcaa 5396746  T
Q  301 ataatgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  5396745 ataatgagaatgactaagattgagaattttcagcttctccagcctctgcaagaacataaatat 5396683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 123 - 358
Target Start/End: Original strand, 5147004 - 5147239
Alignment:
Q  123 atttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaatgctaggagaaat 222  Q
    |||||||| ||||||| ||| |||| ||| | |  |||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||     
T  5147004 atttcaacctatatatacttcttggaagacttcgaaggctagtacaatcttccaaatttatcagaagaattttattgagatatccaatactatgagaaac 5147103  T
Q  223 ctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattg 322  Q
     ||||| |   ||||||||||   |||||| || | |||||||| |||||||||| |||||| |||||| ||||| | ||||||||| ||||| || |||    
T  5147104 ttcagacaacattggacaatcagagagtactagttgttcaagattaggcaagtttaaaaagtttggggtctgtgtcaaataatgagagtgactaagcttg 5147203  T
Q  323 agaattttcagtttctccagcctctgcaagaacata 358  Q
    |||||||| || ||||||| ||||||||||||||||    
T  5147204 agaatttttagcttctccatcctctgcaagaacata 5147239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 71 - 330
Target Start/End: Original strand, 5243923 - 5244182
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaat 170  Q
    |||||||| || |||||| ||| ||| || || ||||||| |||||||| | ||||||||||||| |||||| |||| ||  | |  |||| |  |||||    
T  5243923 tcttccaacttctcaatcattatacaccctgagagaatgaaagttttcagagatttcaacttatagatgcttcttggaaggcttcgaaggctaacacaat 5244022  T
Q  171 cttccaaatctatcagaagaattttattgagatgtccaatgctaggagaaatctcaga-aagacttggacaatctttgagtacgagcttttcaagataag 269  Q
    ||||||||||||| |||||||||| | ||||||  |||||||||||||||||||| || || ||| | ||||||||||||||| |||||||||||||  |    
T  5244023 cttccaaatctattagaagaatttcactgagattcccaatgctaggagaaatctcggacaacact-gaacaatctttgagtactagcttttcaagatttg 5244121  T
Q  270 gcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaatttt 330  Q
     || || ||||||||||||||| || || ||| ||||||||||||| ||||| ||||||||    
T  5244122 acatgtatgaaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaatttt 5244182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 5179622 - 5179521
Alignment:
Q  15 ttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatgagagt 114  Q
    |||||||||||| ||| || | ||| || ||||| |||||||| ||||| || || |||||||| |||| ||||||| |||| ||||||||||| |||||    
T  5179622 ttattgcagtgtcattagcaatcagggtcgttaaggattccatttcttccaagtcctcttccaacttgttaatctttgaacacccagaaagaatcagagt 5179523  T
Q  115 tt 116  Q
    ||    
T  5179522 tt 5179521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 455
Target Start/End: Complemental strand, 5433622 - 5433556
Alignment:
Q  389 aaggtatcatgaatgaaggataagcatcagatcatgtaattgttggaatacatgggtacatggaaat 455  Q
    ||||||||| | |||||||||||||   ||||| || ||||||||||||||||| ||| ||||||||    
T  5433622 aaggtatcacgtatgaaggataagcgatagatcttggaattgttggaatacatgagtagatggaaat 5433556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 5281388 - 5281280
Alignment:
Q  8 actctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaa 107  Q
    |||||| |||||||||||| ||| || | ||| || ||||| |||||||| | ||| || || ||||| || |||| |||| || |||| ||||||||||    
T  5281388 actcttgttattgcagtgtcattagcaatcagggtcgttaaggattccatttgttccaagtcctcttctaacttgttaatcattgaacacccagaaagaa 5281289  T
Q  108 tgagagttt 116  Q
    | |||||||    
T  5281288 tcagagttt 5281280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 4344727 - 4344387
Alignment:
Q  15 ttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatgagagt 114  Q
    |||| |||||||||||||| | ||||||||||||||||||||| | ||| || || |||||||| ||||||||| ||||||| ||||| |||||||||||    
T  4344727 ttatagcagtgttatttgcaatcagagtggttaaagattccatttgttccaagtcctcttccaacttgtcaatcattaaacatccagatagaatgagagt 4344628  T
Q  115 tttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaatgcta 214  Q
    ||||| | |||||||| |||| ||| || |||| || ||||| |||| | |||||| || ||||| ||||| ||||||||| |||||||||||||| ||     
T  4344627 tttcagagatttcaacgtatagatgtttcttggaaggttacaaaggctaatacaatttttcaaatttatcaaaagaattttgttgagatgtccaatactt 4344528  T
Q  215 ggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgac 314  Q
     | ||||||||||| || |||||||||||||||||||| ||||||||||||| |||||||| ||||||||| || || ||||| ||| ||||||||||||    
T  4344527 tgggaaatctcagacagccttggacaatctttgagtactagcttttcaagattaggcaagtatgaaaagtcaggcgtctgtgtcagacaatgagaatgac 4344428  T
Q  315 ttagattgagaattttcagtttctccagcctctgcaagaac 355  Q
    | ||||||||||||||||| |  |||| |||||||||||||    
T  4344427 tgagattgagaattttcagctgatccatcctctgcaagaac 4344387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 4123929 - 4124287
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    |||||| || |||| ||||| |||||||| | ||||||||||||||||||||| | ||| ||||| |||||||| ||||||||| ||||||| || || |    
T  4123929 ggcacttttgttatagcagtattatttgcaatcagagtggttaaagattccatttgttccaactcctcttccaacttgtcaatcattaaacatcccgata 4124028  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||||||||||| | ||||||||  ||| ||| || |||| || ||| | |||| ||||||||||| ||||| ||||| ||||| ||| || |||||    
T  4124029 gaatgagagttttcagagatttcaacgaataaatgtttcttggaaggttagaaaggctagtacaatctttcaaatttatcaaaagaactttcttaagatg 4124128  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    ||||||  || | || | |||||| || |||||||||||||||||||| ||||||||||| | |||||||| ||||||||| ||||| ||||| ||||||    
T  4124129 tccaattgtatgggatacctcagacagccttggacaatctttgagtaccagcttttcaaggttaggcaagtatgaaaagtcaggggtctgtgtcagataa 4124228  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
    ||||||||||| ||||||||||||||||| | |||||  ||||||||||||| ||||||    
T  4124229 tgagaatgactaagattgagaattttcagctgctccattctctgcaagaacagaaatat 4124287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 21 - 363
Target Start/End: Complemental strand, 4361152 - 4360810
Alignment:
Q  21 cagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaa 120  Q
    ||||||||||||| | ||||||||||||||||||||| | ||| || || ||||||||  |||||||| || |||| ||||| ||||||||||||||||     
T  4361152 cagtgttatttgcaatcagagtggttaaagattccatttgttccaagtcctcttccaacgtgtcaatcattgaacatccagatagaatgagagttttcag 4361053  T
Q  121 atatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaatgctaggagaa 220  Q
    | |||||||| |||| ||| || |||| || ||||| |||| | | ||||||| ||||| ||||| ||||||||| |||||||||||||| ||  | |||    
T  4361052 agatttcaacgtatagatgtttcttggaaggttacaaaggctaatgcaatctttcaaatttatcaaaagaattttcttgagatgtccaatactttgggaa 4360953  T
Q  221 atctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagat 320  Q
    |||||||| || |||||||||||||| ||||| ||||||||||||| |||||||| ||||||||| || || ||||| ||||| ||||||||||| ||||    
T  4360952 atctcagacagccttggacaatctttaagtactagcttttcaagattaggcaagtatgaaaagtcaggcgtctgtgtcagatattgagaatgactaagat 4360853  T
Q  321 tgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
    ||||||||||||| | ||||| || ||| || |||||||||||    
T  4360852 tgagaattttcagctgctccatcccctgaaataacataaatat 4360810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 21 - 354
Target Start/End: Complemental strand, 4335420 - 4335087
Alignment:
Q  21 cagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaa 120  Q
    ||||||||| |||||  |||||||||||||||||||| | ||| || || |||||||| ||||||||||||||||| || || ||||||||||||||||     
T  4335420 cagtgttatctgccatgagagtggttaaagattccatttgttccaagtcctcttccaacttgtcaatctttaaacatcctgatagaatgagagttttcag 4335321  T
Q  121 atatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaatgctaggagaa 220  Q
    | | |||||| |||| ||| || |||| || ||||| |||| | | ||||||| ||||| ||||| ||||| ||| || |||||||||||  || | ||     
T  4335320 agacttcaacgtatagatgtttcttggaaggttacaaaggctaatgcaatctttcaaatttatcaaaagaactttcttaagatgtccaattgtatgggat 4335221  T
Q  221 atctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagat 320  Q
    | |||||| || || ||||||||||||||||| || |||||||||| |||||||| |||||| || ||||| ||||||||||||||||||||||| ||||    
T  4335220 acctcagacagcctcggacaatctttgagtactaggttttcaagattaggcaagtatgaaaaatcaggggtctgtgttagataatgagaatgactaagat 4335121  T
Q  321 tgagaattttcagtttctccagcctctgcaagaa 354  Q
    ||||||||||||  | ||||| ||||||||||||    
T  4335120 tgagaattttcaactgctccatcctctgcaagaa 4335087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 4320625 - 4320955
Alignment:
Q  21 cagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaa 120  Q
    |||| |||||||| | ||| ||||||||||||||||| | ||| || || |||||||| ||||||||| ||||||| || || ||||||||||| ||||     
T  4320625 cagtattatttgcaatcagggtggttaaagattccatttgttccaagtcctcttccaacttgtcaatcattaaacatcccgatagaatgagagtattcag 4320724  T
Q  121 atatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaatgctaggagaa 220  Q
    |  ||||||| |||| ||| || |||| ||  |||| |||| | ||||||||| ||||| ||||| || || ||| |||||||||||||||||| | |||    
T  4320725 agttttcaacgtatagatgtttcttggaaggctacaaaggctaatacaatctttcaaatttatcaaaacaacttttttgagatgtccaatgctatgggaa 4320824  T
Q  221 atctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagat 320  Q
    | || ||| || ||||| ||||||| ||| || ||||||||||||| |||||||| ||||||||| ||||| ||||| | || |||||||||||| ||||    
T  4320825 acctgagacagccttgggcaatcttcgagcactagcttttcaagattaggcaagtatgaaaagtcaggggtctgtgtcaaatgatgagaatgactaagat 4320924  T
Q  321 tgagaattttcagtttctccagcctctgcaa 351  Q
    | ||||| ||||| | ||||| |||||||||    
T  4320925 ttagaatcttcagctgctccatcctctgcaa 4320955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 4133415 - 4133769
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    |||||| || |||||||||||||||   | | ||||||||||||||| ||||| | ||| || ||  ||||||| ||||||||  ||||||| |||||||    
T  4133415 ggcacttttgttattgcagtgttatccacaatcagagtggttaaagactccatttgttccaagtc--cttccaatttgtcaataattaaacagccagaaa 4133512  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    |||| |||||||||| | ||||||||  ||| ||| || |||| || ||||  |||| |||||| |||| ||||| ||| |  |||| ||||| ||||||    
T  4133513 gaataagagttttcagagatttcaacgaatagatggttcttggaaggttacgaaggctagtacagtctttcaaatttataatgagaactttatggagatg 4133612  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
     |||||| || | |||| |||||| || |||||||||||||||||||  || ||||| |||| ||||| || |||||| |||||||| |||  |||| ||    
T  4133613 accaatggtatgggaaacctcagacagccttggacaatctttgagtattagtttttctagattaggcatgtgtgaaaaatctggggtctgtactagacaa 4133712  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaat 361  Q
    ||||||||||| |||||||||| ||| || |||||||||||||||||||||| ||||    
T  4133713 tgagaatgactaagattgagaaattttagattctccagcctctgcaagaacaaaaat 4133769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 351
Target Start/End: Complemental strand, 6772968 - 6772849
Alignment:
Q  232 acttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttc 331  Q
    |||||||||||  |||||||| |||||||||||||  ||||||| |||||||||||||||||  || | || ||| |||||||| ||||| ||||||||     
T  6772968 acttggacaattcttgagtactagcttttcaagattcggcaagtatgaaaagtctggggtttcggtcaaatcatgggaatgactaagattaagaattttt 6772869  T
Q  332 agtttctccagcctctgcaa 351  Q
    || ||||| ||| |||||||    
T  6772868 agattctctagcatctgcaa 6772849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 6815334 - 6815227
Alignment:
Q  232 acttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttc 331  Q
    ||||||||||| ||||||||| |||||||||||||  ||||||| || ||||||||||||||  || | ||   |||||||||||||||| ||||||||     
T  6815334 acttggacaatttttgagtactagcttttcaagatttggcaagtatgtaaagtctggggtttcagtcaaatctggagaatgacttagattaagaattttt 6815235  T
Q  332 agtttctc 339  Q
    || |||||    
T  6815234 agattctc 6815227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 354
Target Start/End: Original strand, 6498743 - 6498865
Alignment:
Q  232 acttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttc 331  Q
    ||||||||| ||||||||||| |||||||||| || ||||||||  | ||||||||||||||   | | ||  ||||||||||| ||||| ||||||||     
T  6498743 acttggacagtctttgagtactagcttttcaatattaggcaagtacgtaaagtctggggtttcaatcaaattctgagaatgactaagattaagaatttta 6498842  T
Q  332 agtttctccagcctctgcaagaa 354  Q
    || ||||| ||| ||||||||||    
T  6498843 agattctctagcatctgcaagaa 6498865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 232 - 360
Target Start/End: Complemental strand, 6758588 - 6758460
Alignment:
Q  232 acttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttc 331  Q
    ||||||||| | |||||| || ||||||||||||| ||| ||||  |||||||||||| |||  || | ||   |||||||||| ||||| |||||||||    
T  6758588 acttggacagtttttgagcaccagcttttcaagattaggaaagtaggaaaagtctgggcttttagtcaaatccagagaatgactaagattaagaattttc 6758489  T
Q  332 agtttctccagcctctgcaagaacataaa 360  Q
    || ||||| ||| |||||||||| |||||    
T  6758488 agattctctagcttctgcaagaaaataaa 6758460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 360
Target Start/End: Complemental strand, 6837194 - 6837010
Alignment:
Q  176 aaatctatcagaagaattttattgagatgtccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagt 275  Q
    |||| ||||||||||| ||||| ||||  |||||||||| | || | | |||| | ||||||||| ||||||||||| |||||||||||||  ||||  |    
T  6837194 aaatttatcagaagaagtttatggagagatccaatgctatgggagaccgcagacaaacttggacagtctttgagtactagcttttcaagattcggcatat 6837095  T
Q  276 ttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaa 360  Q
     ||| |||||||| ||||  || | ||  ||||||||||| ||||| |||||||| |  ||||  ||| |||||||||| |||||    
T  6837094 atgagaagtctggagtttcagtcaaatcctgagaatgactaagattaagaatttttaagttctttagcatctgcaagaaaataaa 6837010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 6752824 - 6752726
Alignment:
Q  232 acttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaatttt 330  Q
    ||||||||| ||||||||||| ||||||||||||| |||||  | |||||||||||| ||||  || | ||  ||||||||||| ||||| ||||||||    
T  6752824 acttggacagtctttgagtacaagcttttcaagattaggcatatatgaaaagtctggagtttcggtcaaatcctgagaatgactaagattaagaatttt 6752726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 360
Target Start/End: Complemental strand, 6715688 - 6715503
Alignment:
Q  175 caaatctatcagaagaattttattgagatgtccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaag 274  Q
    ||||| |||||||||||||||||  |||  |||||||||| | || | |  ||| | ||||||||| |||| |||||  |||||||||||||  |||| |    
T  6715688 caaatttatcagaagaattttatgcagagatccaatgctatgggagaccgtagacaaacttggacagtcttcgagtataagcttttcaagatttggcatg 6715589  T
Q  275 tttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaa 360  Q
    | |||||||||||| ||||  || | || | ||||||| || ||||| |||| ||| || ||||| ||| |||||||||| |||||    
T  6715588 tatgaaaagtctggtgtttcagtcaaatcaagagaatggctgagattaagaacttttagattctctagcatctgcaagaaaataaa 6715503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 6650930 - 6650870
Alignment:
Q  233 cttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggttt 293  Q
    |||||||| ||||||||||| ||||||||||||| ||||| |  |||||||||||||||||    
T  6650930 cttggacagtctttgagtactagcttttcaagattaggcatgaatgaaaagtctggggttt 6650870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 6675567 - 6675460
Alignment:
Q  232 acttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttc 331  Q
    ||||||||| |||||||| || |||||||||| ||  ||||||| |||||||||||||||||  |  | ||  ||||||||||| ||||| ||||||||     
T  6675567 acttggacagtctttgagcaccagcttttcaatattgggcaagtatgaaaagtctggggtttcagccaaattttgagaatgactaagattaagaattttt 6675468  T
Q  332 agtttctc 339  Q
    || |||||    
T  6675467 agattctc 6675460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 6532392 - 6532510
Alignment:
Q  175 caaatctatcagaagaattttattgagatgtccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaag 274  Q
    ||||| ||||||||||| ||| | ||||  |||||||||| | || | | |||| | ||||||||| ||||||||||| | ||||||||||| |||||      
T  6532392 caaatttatcagaagaagtttttggagagatccaatgctatgggagaccgcagacaaacttggacagtctttgagtactaacttttcaagattaggcata 6532491  T
Q  275 tttgaaaagtctggggttt 293  Q
    | |||||||| ||||||||    
T  6532492 tatgaaaagtttggggttt 6532510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 6728270 - 6728172
Alignment:
Q  232 acttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaatttt 330  Q
    ||||||||| | |||||| |||||||||||||||| ||| ||||  ||||||||||||||||  || | ||   |||||||||| ||||| ||||||||    
T  6728270 acttggacagtttttgagcacgagcttttcaagattaggtaagtaggaaaagtctggggtttcagtcaaatccagagaatgactaagattaagaatttt 6728172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 342
Target Start/End: Original strand, 7885417 - 7885718
Alignment:
Q  41 gtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaatatttcaacttatatatgc 140  Q
    ||||||||||||| ||| | ||| |  || ||||| || |||||||| |||  ||| ||||| |||||||| |||||||   | |  |||||||||||||    
T  7885417 gtggttaaagatttcatttgttctatatcctcttctaacttgtcaatttttgtacatccagacagaatgagtgttttcagcgagtctaacttatatatgc 7885516  T
Q  141 tttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaatgctaggagaaatctcagaaagacttggaca 240  Q
    |  |||| || |  |  ||||| |||||||||| ||||| ||| | |||||| || ||||||||||| ||  ||| ||||| |  ||| | ||| |||||    
T  7885517 tccttggaagttctcgaaggcctgtacaatctttcaaatttattaaaagaatctttttgagatgtcctatattagaagaaaccgaagacaaactgggaca 7885616  T
Q  241 atctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttcagtttctcc 340  Q
    ||| || ||||  | |||||||||||  ||||| ||||||||||| ||||| ||| | |  |  ||||||||||| | ||| ||||||||||| ||| ||    
T  7885617 atccttaagtattaacttttcaagatttggcaattttgaaaagtcgggggtatgtctcaagttgtgagaatgactcaaattaagaattttcagcttcacc 7885716  T
Q  341 ag 342  Q
    ||    
T  7885717 ag 7885718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 6796708 - 6796590
Alignment:
Q  175 caaatctatcagaagaattttattgagatgtccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaag 274  Q
    ||||| ||| |||||||||||||  |||  |||||||||| | || | |  ||| | ||||||||||| ||| ||||| |||||||||||||  || |||    
T  6796708 caaatttatgagaagaattttatgtagagatccaatgctatgggagaccgtagacaaacttggacaattttttagtactagcttttcaagatttggtaag 6796609  T
Q  275 tttgaaaagtctggggttt 293  Q
    | || ||||||||||||||    
T  6796608 tatgtaaagtctggggttt 6796590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 6545665 - 6545726
Alignment:
Q  232 acttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggttt 293  Q
    |||||||||  |||||||||| | ||||||||||| |||||  | |||||||||||||||||    
T  6545665 acttggacagcctttgagtactatcttttcaagattaggcatatatgaaaagtctggggttt 6545726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 47986842 - 47987194
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| |||| |||||||||||||| | || ||| |||||||||| ||| | ||| |  || |||||||| |||| |||||||||||| |||||||    
T  47986842 ggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaacagccagaaa 47986941  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||||||||| | | |||| || || ||| ||||| |||||||  ||||||||| | |||| |||||||||| ||||||||||||||| | ||||||    
T  47986942 gaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattttgtcgagatg 47987041  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    |||||||||||||||||||||||| |   |||| |||||||||||||| |||||||| |||| ||||| ||||||||||||  || || |||| ||||||    
T  47987042 tccaatgctaggagaaatctcagataacattgggcaatctttgagtactagcttttcgagattaggcatgtttgaaaagtcaaggcttcgtgtgagataa 47987141  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacat 357  Q
    ||||||||||| |||||||||||||| || || |||| | |||||||||||||    
T  47987142 tgagaatgactaagattgagaatttttagcttttccatcttctgcaagaacat 47987194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 47996129 - 47996481
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| |||| |||||||||||||| | || ||| |||||||||| ||| | ||| |  || |||||||| |||| |||||||||||| |||||||    
T  47996129 ggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaacagccagaaa 47996228  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||||||||| | | |||| || || ||| ||||| |||||||  ||||||||| | |||| |||||||||| ||||||||||||||| | ||||||    
T  47996229 gaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattttgtcgagatg 47996328  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    |||||||||||||||||||||||| |   |||| |||||||||||||| |||||||| |||| ||||| ||||||||||||  || || |||| ||||||    
T  47996329 tccaatgctaggagaaatctcagataacattgggcaatctttgagtactagcttttcgagattaggcatgtttgaaaagtcaaggcttcgtgtgagataa 47996428  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacat 357  Q
    ||||||||||| |||||||||||||| || || |||| | |||||||||||||    
T  47996429 tgagaatgactaagattgagaatttttagcttttccatcttctgcaagaacat 47996481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 48005416 - 48005768
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| |||| |||||||||||||| | || ||| |||||||||| ||| | ||| |  || |||||||| |||| |||||||||||| |||||||    
T  48005416 ggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaacagccagaaa 48005515  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||||||||| | | |||| || || ||| ||||| |||||||  ||||||||| | |||| |||||||||| ||||||||||||||| | ||||||    
T  48005516 gaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattttgtcgagatg 48005615  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    |||||||||||||||||||||||| |   |||| |||||||||||||| |||||||| |||| ||||| ||||||||||||  || || |||| ||||||    
T  48005616 tccaatgctaggagaaatctcagataacattgggcaatctttgagtactagcttttcgagattaggcatgtttgaaaagtcaaggcttcgtgtgagataa 48005715  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacat 357  Q
    ||||||||||| |||||||||||||| || || |||| | |||||||||||||    
T  48005716 tgagaatgactaagattgagaatttttagcttttccatcttctgcaagaacat 48005768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 48014701 - 48015053
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| |||| |||||||||||||| | || ||| |||||||||| ||| | ||| |  || |||||||| |||| |||||||||||| |||||||    
T  48014701 ggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaacagccagaaa 48014800  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||||||||| | | |||| || || ||| ||||| |||||||  ||||||||| | |||| |||||||||| ||||||||||||||| | ||||||    
T  48014801 gaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattttgtcgagatg 48014900  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    |||||||||||||||||||||||| |   |||| |||||||||||||| |||||||| |||| ||||| ||||||||||||  || || |||| ||||||    
T  48014901 tccaatgctaggagaaatctcagataacattgggcaatctttgagtactagcttttcgagattaggcatgtttgaaaagtcaaggcttcgtgtgagataa 48015000  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacat 357  Q
    ||||||||||| |||||||||||||| || || |||| | |||||||||||||    
T  48015001 tgagaatgactaagattgagaatttttagcttttccatcttctgcaagaacat 48015053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 32411256 - 32411336
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaatatttcaacttatatatgctttttgggaga 151  Q
    |||||||| || ||||||||| ||||||||||||| ||||||||||||||| ||||||| | ||||||  | |||||||||    
T  32411256 tcttccaagttttcaatctttgaacaaccagaaaggatgagagttttcaaagatttcaattgatatatcttctttgggaga 32411336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 6905985 - 6906030
Alignment:
Q  74 tccaaattgtcaatctttaaacaaccagaaagaatgagagttttca 119  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||    
T  6905985 tccaatttgtcaatctttgaacaaccaaaaagaatgagagttttca 6906030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 8890 - 9248
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| ||| ||||||||||| ||| ||||||||||||||||||||||| | ||| |  || |||||||| ||||||||| ||| ||| |||||||    
T  8890 ggcactcttgttaatgcagtgttatctgcaagcagagtggttaaagattccatctgttctatgtcctcttccaacttgtcaatcattatacacccagaaa 8989  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||||||||||| | ||||||||||||| |||||| |||| ||  |||  |||| |  |||||||||||||||||| ||||| |||| |  |||||     
T  8990 gaatgagagttttcagagatttcaacttatagatgcttcttggaaggctacgaaggctaacacaatcttccaaatctattagaagtatttcaccgagatc 9089  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    ||||||| || |||||| ||| |  |   ||||||||||||||||||| ||||||||||||| |||||| | ||||||||||||||| ||  | | ||||    
T  9090 tccaatggtatgagaaacctcggtcaacattggacaatctttgagtactagcttttcaagattaggcaaatatgaaaagtctggggtatgcatcaaataa 9189  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaatat 363  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  9190 tgagaatgactaagattgagaattttcagcttcgccagcctctgcaagaccataaatat 9248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 8877697 - 8877344
Alignment:
Q  8 actctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaagaa 107  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||| || || || ||||| ||||||||| || |||| ||||||||||    
T  8877697 actctttttattgcagtgttatttgcaagcagagtggttaaagatttcatctgttctaagtcctcctccaacttgtcaatcattgaacacccagaaagaa 8877598  T
Q  108 tgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtcc 207  Q
    |||||| ||| | | |||||||||| ||||| ||| |||| ||  | |  |||| | ||||||||||||||| ||||| ||||| |||||| ||| ||||    
T  8877597 tgagagattttagagatttcaacttgtatatacttcttggaaggctccgaaggctaatacaatcttccaaatttatcaaaagaactttattcagaagtcc 8877498  T
Q  208 aatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatga 307  Q
     ||  || | ||||||||    |  || ||||||||||||||||| ||||||||||||| |||||||||| |||||||||| |||||||| |||| ||||    
T  8877497 tatagtatgcgaaatctctatcaacctcggacaatctttgagtactagcttttcaagattaggcaagtttaaaaagtctggagtttgtgtcagatgatga 8877398  T
Q  308 gaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaat 361  Q
    || || || |||||||||||||| || ||||||| |||||||||||||||||||    
T  8877397 gagtggctaagattgagaatttttagcttctccatcctctgcaagaacataaat 8877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 20812302 - 20812254
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttca 119  Q
    |||||||| || ||||||||| |||||||||||||||| ||||||||||    
T  20812302 tcttccaacttctcaatctttgaacaaccagaaagaataagagttttca 20812254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 20838657 - 20838609
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttca 119  Q
    |||||||| || ||||||||| |||||||||||||||| ||||||||||    
T  20838657 tcttccaatttctcaatctttgaacaaccagaaagaataagagttttca 20838609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 15802927 - 15802888
Alignment:
Q  80 ttgtcaatctttaaacaaccagaaagaatgagagttttca 119  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  15802927 ttgtcaatctttgaacaaccagaaaggatgagagttttca 15802888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 4e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 36213819 - 36214175
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    ||||||||| ||||||||||||||||||| | ||  ||||||||||||||||| | ||| |  || |||||||| |||||||||||| |||| |||||||    
T  36213819 ggcactcttgttattgcagtgttatttgcaatcaaggtggttaaagattccatctgttccatgtcctcttccaatttgtcaatctttgaacatccagaaa 36213918  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatg 204  Q
    ||||||||||||| |   |||| |||||||| || | ||| || ||  |    |||| | ||||||||||||||| ||| ||||||| ||||||||||||    
T  36213919 gaatgagagttttaagtaattttaacttatagatacctttaggaaggctttgaaggctaatacaatcttccaaatttattagaagaactttattgagatg 36214018  T
Q  205 tccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataa 304  Q
    |||||| ||  | |||| |||||| |  |||||||||||| ||||||| || |||||||| | ||||| ||||||||| ||||| || | ||| ||||||    
T  36214019 tccaatactgtgggaaacctcagacaatcttggacaatctgtgagtactagtttttcaaggttaggcatgtttgaaaaatctggagtctttgtcagataa 36214118  T
Q  305 tgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaat 361  Q
    ||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||    
T  36214119 tgagaatgactaagattgagaattttcagcttttccagcctctgcaagaacagaaat 36214175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 333
Target Start/End: Original strand, 34724642 - 34724904
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaat 170  Q
    |||||||| |||||||| |||  ||| ||||| | |||||||||||| |   | ||||| ||||| |||||| |||| || | ||| ||||| ||||| |    
T  34724642 tcttccaacttgtcaatttttgtacatccagacacaatgagagtttttactgacttcaatttatagatgcttcttggaagctcacaaaggcctgtacagt 34724741  T
Q  171 cttccaaatctatcagaagaattttattgagatgtccaatgctaggagaaatctcagaa-agacttggacaatctttgagtacgagcttttcaagataag 269  Q
    ||| ||||| |||||  |||||||| ||||||| ||| ||  ||||||||| || || | | | ||||||||||||||||||  | |||||||||||  |    
T  34724742 ctttcaaatttatcaatagaattttcttgagatttcctatattaggagaaa-ctgaggacaaatttggacaatctttgagtattaacttttcaagatttg 34724840  T
Q  270 gcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttcag 333  Q
    |||||| |||||||||||| |||||| | |  | |||||||||||| ||||| |||| ||||||    
T  34724841 gcaagtatgaaaagtctggtgtttgtttcaagttatgagaatgactaagattaagaaatttcag 34724904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 326
Target Start/End: Complemental strand, 18935351 - 18935156
Alignment:
Q  131 ttatatatgctttttgggagattacataggccagtacaatcttccaaatctatcagaagaattttattgagatgtccaatgctaggagaaatctcagaaa 230  Q
    ||||| |||||| |||| || | ||| ||||| ||||| |||| ||||| ||| | ||||||||| |||||| |||| || ||| |||||| |   || |    
T  18935351 ttatagatgcttcttggaagttcacaaaggcctgtacagtctttcaaatttattaaaagaattttcttgagaagtcctatactatgagaaaccgaggaca 18935252  T
Q  231 gacttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaa 326  Q
     |||||| |||||||||||||  | |||||||||||  ||||||||||||||||  ||||||||| | || | |||||||||||| ||||| ||||    
T  18935251 aacttgggcaatctttgagtattaacttttcaagattcggcaagtttgaaaagttcggggtttgtctcaggttatgagaatgactaagattaagaa 18935156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 22584204 - 22584349
Alignment:
Q  5 ggcactctttttattgcagtgttatttgccagcagagtggttaaagattccatatcttcaaactcatcttccaaattgtcaatctttaaacaaccagaaa 104  Q
    |||||| ||||||||||||| | |||||| ||||||||||||||||||||||| | ||| || || |||||||| || | ||  ||| |||| |||||||    
T  22584204 ggcactttttttattgcagtttcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttataaagtttttaacagccagaaa 22584303  T
Q  105 gaatgagagttttcaaatatttcaacttatatatgctttttgggag 150  Q
    ||||||||||||||||| |||||||||| || ||| || |||||||    
T  22584304 gaatgagagttttcaaagatttcaacttgtagatgtttcttgggag 22584349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 14767123 - 14767181
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaatatttcaa 129  Q
    |||||||| |||||||||||| |||| || ||||| ||||||||||||||| |||||||    
T  14767123 tcttccaatttgtcaatctttgaacagccggaaaggatgagagttttcaaagatttcaa 14767181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 8502 - 8609
Alignment:
Q  232 acttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttc 331  Q
    ||||||||||| ||||||||| |||||||||||||  ||||||| || ||||||||||||||  || | ||   |||||||||||||||| ||||||||     
T  8502 acttggacaatttttgagtactagcttttcaagatttggcaagtatgtaaagtctggggtttcagtcaaatctggagaatgacttagattaagaattttt 8601  T
Q  332 agtttctc 339  Q
    || |||||    
T  8602 agattctc 8609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 360
Target Start/End: Complemental strand, 9610 - 9426
Alignment:
Q  176 aaatctatcagaagaattttattgagatgtccaatgctaggagaaatctcagaaagacttggacaatctttgagtacgagcttttcaagataaggcaagt 275  Q
    |||| ||||||||||| ||||| ||||  |||||||||| | || | | |||| | ||||||||| ||||||||||| |||||||||||||  ||||  |    
T  9610 aaatttatcagaagaagtttatggagagatccaatgctatgggagaccgcagacaaacttggacagtctttgagtactagcttttcaagattcggcatat 9511  T
Q  276 ttgaaaagtctggggtttgtgttagataatgagaatgacttagattgagaattttcagtttctccagcctctgcaagaacataaa 360  Q
     ||| |||||||| ||||  || | ||  ||||||||||| ||||| |||||||| |  ||||  ||| |||||||||| |||||    
T  9510 atgagaagtctggagtttcagtcaaatcctgagaatgactaagattaagaatttttaagttctttagcatctgcaagaaaataaa 9426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 3286691 - 3286831
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaat 170  Q
    |||||||| |||||||||||| ||||||||||||| |||||||| |||||| ||||||  | ||| || || ||||||||||| |  || ||  |||| |    
T  3286691 tcttccaacttgtcaatctttgaacaaccagaaaggatgagagtgttcaaagatttcagttgatagatactctttgggagattgctaagacctatacagt 3286790  T
Q  171 cttccaaatctatcagaagaattttattgagatgtccaatg 211  Q
    | | ||||| || || ||||| ||||||||||| |||||||    
T  3286791 ccttcaaatttaacataagaagtttattgagatctccaatg 3286831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 3262802 - 3262884
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaatatttcaacttatatatgctttttgggagatt 153  Q
    |||||||| |||||||||||| | ||||||||||| ||||||||||||||| ||||||| |  |||||  | |||||||||||    
T  3262802 tcttccaatttgtcaatctttgagcaaccagaaagtatgagagttttcaaagatttcaattggtatatattctttgggagatt 3262884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 3398696 - 3398744
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttca 119  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  3398696 tcttccaatttgtcaatctttgaacaaccagaaataatgagagttttca 3398744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 13808730 - 13808663
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaatatttcaacttatatat 138  Q
    |||||||| |||||||||||| ||||||||||||  || |||||||||||  ||||||||| ||||||    
T  13808730 tcttccaacttgtcaatctttgaacaaccagaaaagattagagttttcaatgatttcaactgatatat 13808663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 3364194 - 3364149
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttt 116  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||    
T  3364194 tcttccaatttgtcaatctttgaacaaccagaaaggatgagagttt 3364149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 3391712 - 3391757
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttt 116  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||    
T  3391712 tcttccaatttgtcaatctttgaacaaccagaaaggatgagagttt 3391757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 7164828 - 7164889
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaatatttcaactt 132  Q
    |||||||| | | |||||||| ||||||||||||| ||||||||||||||  ||||||||||    
T  7164828 tcttccaactaggcaatctttgaacaaccagaaaggatgagagttttcaatgatttcaactt 7164889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 3267374 - 3267494
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaatatttcaacttatatatgctttttgggagattacataggccagtacaat 170  Q
    ||||| || |||||||||||| ||||||||||||  ||||||||| ||||| | ||||| | || |||  | ||||||||||| |  || |  |||||||    
T  3267374 tcttctaacttgtcaatctttgaacaaccagaaatgatgagagttgtcaaagacttcaattgatttatcttctttgggagattgctaagacttgtacaat 3267473  T
Q  171 cttccaaatctatcagaagaa 191  Q
    ||| ||||| |||||||||||    
T  3267474 ctttcaaatttatcagaagaa 3267494  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 3314883 - 3314835
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttca 119  Q
    |||||||| || ||||||||| |||||||||||||||||| ||||||||    
T  3314883 tcttccaatttttcaatctttgaacaaccagaaagaatgaaagttttca 3314835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 3407499 - 3407547
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttca 119  Q
    |||||||| ||| |||||||| ||||||||||||| |||||||||||||    
T  3407499 tcttccaatttgacaatctttgaacaaccagaaaggatgagagttttca 3407547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 31175872 - 31175824
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttca 119  Q
    |||||||| ||||||||| || |||||||||||||||||||| ||||||    
T  31175872 tcttccaatttgtcaatcattgaacaaccagaaagaatgagacttttca 31175824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 3375103 - 3375053
Alignment:
Q  71 tcttccaaattgtcaatctttaaacaaccagaaagaatgagagttttcaaa 121  Q
    |||||||| |||| ||||||| ||||||||||||| || ||||||||||||    
T  3375103 tcttccaacttgttaatctttgaacaaccagaaagtataagagttttcaaa 3375053  T

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Target: scaffold0813 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 5044 - 5104
Alignment:
Q  233 cttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggttt 293  Q
    |||||||| ||||||||||| ||||||||||||| ||||| |  |||||||||||||||||    
T  5044 cttggacagtctttgagtactagcttttcaagattaggcatgaatgaaaagtctggggttt 5104  T

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Target: scaffold0286 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 6522 - 6462
Alignment:
Q  233 cttggacaatctttgagtacgagcttttcaagataaggcaagtttgaaaagtctggggttt 293  Q
    |||||||| ||||||||||| ||||||||||||| ||||| |  |||||||||||||||||    
T  6522 cttggacagtctttgagtactagcttttcaagattaggcatgaatgaaaagtctggggttt 6462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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