View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18646_high_2 (Length: 337)

Name: NF18646_high_2
Description: NF18646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18646_high_2
NF18646_high_2
[»] chr3 (15 HSPs)
chr3 (41-323)||(22946381-22946663)
chr3 (35-323)||(22971928-22972216)
chr3 (170-318)||(22986259-22986407)
chr3 (71-315)||(22941345-22941589)
chr3 (77-306)||(23039035-23039264)
chr3 (132-306)||(23036164-23036338)
chr3 (132-216)||(23032783-23032867)
chr3 (132-243)||(23017119-23017230)
chr3 (132-306)||(23148752-23148926)
chr3 (132-312)||(23145908-23146088)
chr3 (99-314)||(22831821-22832036)
chr3 (157-312)||(23024260-23024415)
chr3 (260-306)||(23032708-23032754)
chr3 (142-234)||(22916713-22916805)
chr3 (199-264)||(22906334-22906399)
[»] chr1 (3 HSPs)
chr1 (68-318)||(15885730-15885980)
chr1 (80-312)||(12609893-12610125)
chr1 (77-320)||(12636981-12637221)
[»] chr8 (2 HSPs)
chr8 (121-323)||(23610194-23610396)
chr8 (99-314)||(5594029-5594244)
[»] chr6 (2 HSPs)
chr6 (157-306)||(21779807-21779956)
chr6 (170-319)||(12438285-12438434)
[»] scaffold0059 (1 HSPs)
scaffold0059 (77-299)||(62154-62376)
[»] scaffold0554 (1 HSPs)
scaffold0554 (155-306)||(6609-6760)
[»] chr5 (8 HSPs)
chr5 (252-318)||(7154485-7154551)
chr5 (170-315)||(7141633-7141778)
chr5 (252-318)||(41305394-41305460)
chr5 (252-318)||(31177688-31177754)
chr5 (252-318)||(31187751-31187817)
chr5 (252-318)||(31225961-31226027)
chr5 (170-312)||(41654617-41654759)
chr5 (168-205)||(41287164-41287201)
[»] chr2 (1 HSPs)
chr2 (218-312)||(2433600-2433694)
[»] chr4 (1 HSPs)
chr4 (252-318)||(17248568-17248634)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 323
Target Start/End: Complemental strand, 22946663 - 22946381
Alignment:
Q  41 tacttgaaagcaatcacaaaagaggtattaagattgcaccctccagctcctcttttaattccaagggaatgtggacaaaattgtgaggttgatggttatc 140  Q
    |||||||||||||| |  |||||||| |||||| ||||||  || | ||||||||||||||| ||||  |||| ||||   |||||| ||||||||||||    
T  22946663 tacttgaaagcaataatcaaagaggtcttaagaatgcacctacctggtcctcttttaattcctagggtgtgtgcacaagcatgtgagattgatggttatc 22946564  T
Q  141 atataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttat 240  Q
    | ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22946563 acataccaatcaatagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttat 22946464  T
Q  241 tgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcatcaact 323  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22946463 tgatagttctgttgatttcaaaggaacaaattttgagtacattccatttggtgccggaaggagaatttgtccgggcatcaact 22946381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 35 - 323
Target Start/End: Complemental strand, 22972216 - 22971928
Alignment:
Q  35 ttaaattacttgaaagcaatcacaaaagaggtattaagattgcaccctccagctcctcttttaattccaagggaatgtggacaaaattgtgaggttgatg 134  Q
    ||||| |||||||||| |||||  |||||||| |||||| |||||||||| | |||||||||| | |||||||  |||||||||  ||||||| ||||||    
T  22972216 ttaaaatacttgaaagtaatcatcaaagaggtcttaagaatgcaccctcctggtcctcttttagtaccaagggtgtgtggacaagcttgtgagattgatg 22972117  T
Q  135 gttatcatataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaag 234  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22972116 gttatcacataccaatcaaaagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaag 22972017  T
Q  235 atttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcatcaact 323  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||    
T  22972016 atttattgatagttctcttgatttcaaaggaacaaattttgagtacattccatttggtgctggaagaagaatttgtccaggcattaact 22971928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 170 - 318
Target Start/End: Complemental strand, 22986407 - 22986259
Alignment:
Q  170 aatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacta 269  Q
    ||||||||||| |||||| ||||||| |||||||||| ||| || ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  22986407 aatgcttgggccattggacgggatcctaaatattggaatgaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaacta 22986308  T
Q  270 attttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 318  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  22986307 attttgagtacattccatttggtgctggaaggagaatttgtcctggcat 22986259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 71 - 315
Target Start/End: Original strand, 22941345 - 22941589
Alignment:
Q  71 agattgcaccctccagctcctcttttaattccaagggaatgtggacaaaattgtgaggttgatggttatcatataccaatcaaaagtaaggtgataatca 170  Q
    |||||||||||||| ||| |  ||||  ||||||| ||||||||||||   |||||  |  |||| ||| |||||||  | ||||| || |||||| | |    
T  22941345 agattgcaccctcctgctgcatttttgcttccaagagaatgtggacaagcatgtgaaataaatgggtatgatataccttttaaaagcaaagtgatagtga 22941444  T
Q  171 atgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaa 270  Q
    |||||||||| |||||||| ||||||||  |||||  ||| ||||| |  |||||||||||||| |||||||| |||| ||| ||||  || |||| |||    
T  22941445 atgcttgggccattggaagagatccaaatcattgggatgacccagagagattttatcctgaaaggtttattgaaagttgtgtagattataagggaaataa 22941544  T
Q  271 ttttgagtacattccatttggtgccggaaggagaatgtgtccggg 315  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  22941545 ttttgagttcattccatttggtgctggaagaagaatgtgtccggg 22941589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 306
Target Start/End: Complemental strand, 23039264 - 23039035
Alignment:
Q  77 caccctccagctcctcttttaattccaagggaatgtggacaaaattgtgaggttgatggttatcatataccaatcaaaagtaaggtgataatcaatgctt 176  Q
    ||||||||| | ||||||||  | ||||| |||||| | ||||  |||||| |  |||||||||| ||||| || || |||||||||||| |||||||||    
T  23039264 caccctccaacacctcttttgctgccaagagaatgtcgtcaaacatgtgagataaatggttatcacatacctattaagagtaaggtgatagtcaatgctt 23039165  T
Q  177 gggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttga 276  Q
    ||||||||| ||| |||||||| || |||||||| || || |  |||||||| || |||||  |||| ||  |  |||| |  ||||||| ||||| |||    
T  23039164 gggcaattgcaagagatccaaattactggactgagccggagagattttatccagagagattccttgacagcgccattgactataaaggaagtaattatga 23039065  T
Q  277 gtacattccatttggtgccggaaggagaat 306  Q
    ||||||||| |||||||||||||| |||||    
T  23039064 gtacattccttttggtgccggaagaagaat 23039035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 306
Target Start/End: Complemental strand, 23036338 - 23036164
Alignment:
Q  132 atggttatcatataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctga 231  Q
    |||||||||| ||||| || || |||||||| | ||| |||||||||||||||| ||| |||||||| || |||||||| ||||| |  |||||||| ||    
T  23036338 atggttatcacatacctattaagagtaaggtaacaataaatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccga 23036239  T
Q  232 aagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaat 306  Q
     ||||| || || ||  || |||| | |||||| | ||| |||||||||||||| |||||||||||||| |||||    
T  23036238 gagattcatcgacagcgctattgactacaaagggagtaactttgagtacattccttttggtgccggaagaagaat 23036164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 23032867 - 23032783
Alignment:
Q  132 atggttatcatataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccaga 216  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||| || |||||||| |||||    
T  23032867 atggttatcacataccaattaaaagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactggactgaaccaga 23032783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 23017230 - 23017119
Alignment:
Q  132 atggttatcatataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctga 231  Q
    |||||||||| |||||| | || | |||||||||||| |||||||||||||| | ||| |||||||| || |||||||| ||||| ||||||||||| ||    
T  23017230 atggttatcacataccagttaagactaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccaga 23017131  T
Q  232 aagatttattga 243  Q
     ||||| |||||    
T  23017130 gagattcattga 23017119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 306
Target Start/End: Complemental strand, 23148926 - 23148752
Alignment:
Q  132 atggttatcatataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctga 231  Q
    |||||||||| || || || || | ||| ||||||||||||||||||||||||| ||| ||| |||| || |||||||| ||||| | ||||||||| ||    
T  23148926 atggttatcacattccgattaagactaaagtgataatcaatgcttgggcaattgcaagagattcaaactactggactgaaccagagaggttttatccaga 23148827  T
Q  232 aagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaat 306  Q
     ||||| ||||| ||   | |||| |  ||||| | ||| || ||||||||||| |||||||||||||| |||||    
T  23148826 gagattcattgaaagcgatattgactataaagggagtaacttcgagtacattccttttggtgccggaagaagaat 23148752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 312
Target Start/End: Complemental strand, 23146088 - 23145908
Alignment:
Q  132 atggttatcatataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctga 231  Q
    |||||||||| ||||| || || | ||||||| || |||||||||||||| ||| ||| |||||||| || |||||||| ||||| | ||||||||| ||    
T  23146088 atggttatcacataccgattaagactaaggtgttagtcaatgcttgggcagttgcaagagatccaaactactggactgaaccagagaggttttatccaga 23145989  T
Q  232 aagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtcc 312  Q
     ||||| || || ||   | |||| |  ||||| | ||| |||||||||||||| |||||||| ||||| ||||| |||||    
T  23145988 gagattcatcgacagcgatattgactataaagggagtaactttgagtacattccttttggtgctggaagaagaatatgtcc 23145908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 314
Target Start/End: Complemental strand, 22832036 - 22831821
Alignment:
Q  99 ttccaagggaatgtggacaaaattgtgaggttgatggttatcatataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaa 198  Q
    ||||||| ||||||||| ||   |||||| |  |||| ||| |||||||  | ||||| || |||||| | ||||||||||| |||||||| ||||||||    
T  22832036 ttccaagagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggctattggaagagatccaaa 22831937  T
Q  199 atattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccgga 298  Q
      |||||   || ||||| |  ||||||||||||||||| |||||||||| ||| || |  || || | ||||||||||| |||||| |||||||| ||     
T  22831936 tcattgggacgacccagaaagattttatcctgaaagattcattgatagttgtgtggactataagggtaataattttgagttcattccttttggtgctggt 22831837  T
Q  299 aggagaatgtgtccgg 314  Q
    || ||||||| |||||    
T  22831836 agaagaatgtttccgg 22831821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 312
Target Start/End: Complemental strand, 23024415 - 23024260
Alignment:
Q  157 taaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgat 256  Q
    |||||||||| |||||||||||||||||| ||| |||||||| || ||||| || ||||| | ||||||||| || ||||| || ||||||  | ||||     
T  23024415 taaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggaccgaaccagagaggttttatccagagagattcatcgatagtgatattgac 23024316  T
Q  257 ttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtcc 312  Q
    |  ||||| | ||| |||||||| ||||| |||||||| ||| | ||||| |||||    
T  23024315 tataaagggagtaactttgagtatattccttttggtgcgggacgaagaatatgtcc 23024260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 23032754 - 23032708
Alignment:
Q  260 aaaggaactaattttgagtacattccatttggtgccggaaggagaat 306  Q
    ||||||| |||||||||||||||||| |||||||||||||| |||||    
T  23032754 aaaggaagtaattttgagtacattccctttggtgccggaagaagaat 23032708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 22916713 - 22916805
Alignment:
Q  142 tataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaag 234  Q
    ||||||| | ||||| || |||||| | ||||||||||| |||||||| ||||||||  |||||  ||||||||| |  ||||||||||||||    
T  22916713 tataccatttaaaagcaaagtgatagtgaatgcttgggccattggaagagatccaaataattgggatgatccagaaagattttatcctgaaag 22916805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 22906399 - 22906334
Alignment:
Q  199 atattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaagg 264  Q
    |||||||| |||  |||| || ||||||||||||||||| |||||| |||| ||||||| ||||||    
T  22906399 atattggattgaagcagagaaattttatcctgaaagattaattgattgttcagttgattacaaagg 22906334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 68 - 318
Target Start/End: Original strand, 15885730 - 15885980
Alignment:
Q  68 ttaagattgcaccctccagctcctcttttaattccaagggaatgtggacaaaattgtgaggttgatggttatcatataccaatcaaaagtaaggtgataa 167  Q
    ||||| || ||||||||||||||||||||| ||||||| ||||||| ||||   |||||| ||||||||||||||||||||| |||||| |||||||||     
T  15885730 ttaaggttacaccctccagctcctcttttacttccaagagaatgtgaacaagcatgtgagattgatggttatcatataccaaccaaaagcaaggtgatag 15885829  T
Q  168 tcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaac 267  Q
    ||||||| ||||| |||||||| |||||||| ||||||||||| ||||| | ||||||||| || ||||| |||| ||| ||| |||| |  ||||| |     
T  15885830 tcaatgcatgggcgattggaagagatccaaagtattggactgaaccagagaggttttatccagagagattcattggtagctctattgactataaagggaa 15885929  T
Q  268 taattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 318  Q
    |||||||||||||||||| |||||| | ||||| ||||| || ||||||||    
T  15885930 taattttgagtacattccttttggttctggaagaagaatatgcccgggcat 15885980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 80 - 312
Target Start/End: Complemental strand, 12610125 - 12609893
Alignment:
Q  80 cctccagctcctcttttaattccaagggaatgtggacaaaattgtgaggttgatggttatcatataccaatcaaaagtaaggtgataatcaatgcttggg 179  Q
    ||||||| |||||||||| ||||||| ||||||||||||   |||||| ||||||| |||| ||||||||||||||| ||||||||| ||||||| ||||    
T  12610125 cctccaggtcctcttttacttccaagagaatgtggacaagcatgtgagattgatgggtatcgtataccaatcaaaagcaaggtgatagtcaatgcatggg 12610026  T
Q  180 caattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagta 279  Q
    | |||||||| |||||||| || |||||||| ||||| ||||||||||| || ||||| || | ||| ||| |||| | |||||| | ||||||||||||    
T  12610025 cgattggaagagatccaaagtactggactgaaccagagaagttttatccggagagattcatcggtagctctattgactacaaagggaataattttgagta 12609926  T
Q  280 cattccatttggtgccggaaggagaatgtgtcc 312  Q
    |||||| |||||||| ||||| ||||| |||||    
T  12609925 cattccctttggtgctggaagaagaatatgtcc 12609893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 77 - 320
Target Start/End: Complemental strand, 12637221 - 12636981
Alignment:
Q  77 caccctccagctcctcttttaattccaagggaatgtggacaaaattgtgaggttgatggttatcatataccaatcaaaagtaaggtgataatcaatgctt 176  Q
    ||||||||| ||||||||||| ||   || ||||||||||||   |||||  |||| || ||||||||||||  |||||||||||||||| | ||||| |    
T  12637221 caccctccaactcctcttttactt---agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcat 12637125  T
Q  177 gggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttga 276  Q
    || ||||||| || |||||||| || |||||||| ||||| | |||| |||| || ||||| |||| ||| ||| |||| | |||||||| |||||||||    
T  12637124 ggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttga 12637025  T
Q  277 gtacattccatttggtgccggaaggagaatgtgtccgggcatca 320  Q
    ||||||||| |||||||| ||||| ||||| || || |||||||    
T  12637024 gtacattccttttggtgcaggaagaagaatatgcccaggcatca 12636981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 121 - 323
Target Start/End: Complemental strand, 23610396 - 23610194
Alignment:
Q  121 ttgtgaggttgatggttatcatataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataag 220  Q
    ||||||| || |||| |||||||||||  | |||||||  ||  |||| |||||||||||||| ||||||||||| |||||||||| ||| |||||||||    
T  23610396 ttgtgagattaatggctatcatatacctgtaaaaagtagagtcctaataaatgcttgggcaataggaagggatcctaaatattggaatgacccagataag 23610297  T
Q  221 ttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcatca 320  Q
    |||||||||||||| ||||||||||| ||| ||||||||  ||||||||||||||||| ||||||||||||||| || |||||||| ||||| ||||| |    
T  23610296 ttttatcctgaaaggtttattgatagctctattgatttctcaggaactaattttgagttcattccatttggtgctggtaggagaatttgtcccggcatga 23610197  T
Q  321 act 323  Q
    |||    
T  23610196 act 23610194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 314
Target Start/End: Original strand, 5594029 - 5594244
Alignment:
Q  99 ttccaagggaatgtggacaaaattgtgaggttgatggttatcatataccaatcaaaagtaaggtgataatcaatgcttgggcaattggaagggatccaaa 198  Q
    ||||||| ||||||||| ||   |||||| |  |||| ||| |||||||  | ||||| || |||||| | ||||||||||| |||||||| ||||||||    
T  5594029 ttccaagagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggctattggaagagatccaaa 5594128  T
Q  199 atattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccgga 298  Q
      |||||   || ||||| |  ||||||||||||||||| |||||||||| ||| || |  || || | ||||||||||| |||||| |||||||| ||     
T  5594129 tcattgggacgacccagaaagattttatcctgaaagattcattgatagttgtgtggactataagggtaataattttgagttcattccttttggtgctggt 5594228  T
Q  299 aggagaatgtgtccgg 314  Q
    || ||||||| |||||    
T  5594229 agaagaatgtttccgg 5594244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 306
Target Start/End: Complemental strand, 21779956 - 21779807
Alignment:
Q  157 taaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgat 256  Q
    ||||||||||||||||||||||||||||| ||| |||||||| || |||||||| ||||| | ||||||||| || ||||| || |||||   | ||||     
T  21779956 taaggtgataatcaatgcttgggcaattgcaagagatccaaactactggactgaaccagagatgttttatccagagagattcatcgatagcgatattgac 21779857  T
Q  257 ttcaaaggaactaattttgagtacattccatttggtgccggaaggagaat 306  Q
    || ||||| | ||||||||||||||||||||||||||||||||| |||||    
T  21779856 tttaaagggagtaattttgagtacattccatttggtgccggaagaagaat 21779807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 12438434 - 12438285
Alignment:
Q  170 aatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacta 269  Q
    ||||| |||||||||||||| || ||||| ||||||| |||   ||| |||||| ||||||| |||||||||||| || |  |||||| ||||||  |||    
T  12438434 aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgattgtccaattgattacaaagggtcta 12438335  T
Q  270 attttgagtacattccatttggtgccggaaggagaatgtgtccgggcatc 319  Q
    |||| ||||  || || |||||||| ||||| ||||||||||| ||||||    
T  12438334 atttcgagtttataccttttggtgctggaagaagaatgtgtcccggcatc 12438285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 299
Target Start/End: Complemental strand, 62376 - 62154
Alignment:
Q  77 caccctccagctcctcttttaattccaagggaatgtggacaaaattgtgaggttgatggttatcatataccaatcaaaagtaaggtgataatcaatgctt 176  Q
    ||||| |||| | |||||||| ||||||| |||||| || ||   |||||| ||||||| |||||||||||||| ||||  ||| ||||| | ||||| |    
T  62376 caccccccaggtgctcttttacttccaagagaatgtagagaagcatgtgagattgatgggtatcatataccaatgaaaacaaagctgatagttaatgcat 62277  T
Q  177 gggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttga 276  Q
    ||||||| ||||| |||||||  || ||||| || ||||| | ||||||||| || ||||| |||| ||||||| |||| | ||| || | |||||| ||    
T  62276 gggcaatcggaagagatccaaggtactggacggaaccagagaggttttatccagagagattcattggtagttctattgactacaacgggaataatttcga 62177  T
Q  277 gtacattccatttggtgccggaa 299  Q
    ||||||||| |||||||| ||||    
T  62176 gtacattccttttggtgctggaa 62154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 155 - 306
Target Start/End: Original strand, 6609 - 6760
Alignment:
Q  155 agtaaggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttg 254  Q
    ||||||||||||||||||||||||||||||| ||| |||||||| |  |||||||| ||||| | ||||||||| || ||||| | ||| ||  || |||    
T  6609 agtaaggtgataatcaatgcttgggcaattgcaagagatccaaacttctggactgaaccagagaggttttatccagagagattcactgacagcactattg 6708  T
Q  255 atttcaaaggaactaattttgagtacattccatttggtgccggaaggagaat 306  Q
    | |  |||||   |||||||||||||||||| |||||||| ||||| |||||    
T  6709 actataaagggggtaattttgagtacattccttttggtgctggaagaagaat 6760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 7154485 - 7154551
Alignment:
Q  252 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 318  Q
    ||||||||||||||| |||||||||||| ||||| |||||||| ||||| ||||||||||| |||||    
T  7154485 ttgatttcaaaggaaataattttgagtatattccttttggtgctggaagaagaatgtgtccaggcat 7154551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 315
Target Start/End: Original strand, 7141633 - 7141778
Alignment:
Q  170 aatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacta 269  Q
    ||||| |||||||| ||||| ||||| |||||||||| |||| | || | ||||  ||| || || |||  ||||||||   ||||||||||||||| ||    
T  7141633 aatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaata 7141732  T
Q  270 attttgagtacattccatttggtgccggaaggagaatgtgtccggg 315  Q
    | || ||||||||||| || || || ||||||||||||||||||||    
T  7141733 acttcgagtacattcctttcggagctggaaggagaatgtgtccggg 7141778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 41305394 - 41305460
Alignment:
Q  252 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 318  Q
    ||||||||||||| ||  | ||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  41305394 ttgatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggcat 41305460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 31177754 - 31177688
Alignment:
Q  252 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 318  Q
    ||||||||||||| || || ||||||||||| || || ||||| ||||| ||||||||||| |||||    
T  31177754 ttgatttcaaaggtacaaactttgagtacataccgttcggtgctggaagaagaatgtgtccaggcat 31177688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 31187817 - 31187751
Alignment:
Q  252 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 318  Q
    ||||||||||||| || |||||||| ||||| || || ||||| ||||| ||||||||||| |||||    
T  31187817 ttgatttcaaaggcacaaattttgaatacataccgttcggtgctggaagaagaatgtgtccaggcat 31187751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 31225961 - 31226027
Alignment:
Q  252 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 318  Q
    ||||||||||||| || |||||||| ||||| || || ||||| ||||| ||||||||||| |||||    
T  31225961 ttgatttcaaaggcacaaattttgaatacataccgttcggtgctggaagaagaatgtgtccaggcat 31226027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 312
Target Start/End: Original strand, 41654617 - 41654759
Alignment:
Q  170 aatgcttgggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacta 269  Q
    ||||| |||||||||||||| || | ||| ||||||| |||   ||| ||||||||||| || || ||  | |||  |||  ||||||||| |||  |||    
T  41654617 aatgcatgggcaattggaagagaccaaaagtattggattgaaggagaaaagttttatccagagaggttcttggattcttcaattgatttcagagggtcta 41654716  T
Q  270 attttgagtacattccatttggtgccggaaggagaatgtgtcc 312  Q
    ||||||||| ||| || |||||||| |||| ||||||||||||    
T  41654717 attttgagttcataccttttggtgcaggaaagagaatgtgtcc 41654759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 41287164 - 41287201
Alignment:
Q  168 tcaatgcttgggcaattggaagggatccaaaatattgg 205  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  41287164 tcaatgcttgggcaattggaagagatccaagatattgg 41287201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 2433600 - 2433694
Alignment:
Q  218 aagttttatcctgaaagatttattgatagttctgttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtcc 312  Q
    |||||||||||||| || || || ||| ||   ||||||| ||||||  |||||||||||||||| || |||||||| ||||||||||| |||||    
T  2433600 aagttttatcctgagaggttcatggattgtctagttgattacaaagggtctaattttgagtacataccttttggtgcaggaaggagaatatgtcc 2433694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 17248634 - 17248568
Alignment:
Q  252 ttgatttcaaaggaactaattttgagtacattccatttggtgccggaaggagaatgtgtccgggcat 318  Q
    ||||||||||||| |  ||||| || ||||| ||||||||||| |||||||| || |||||||||||    
T  17248634 ttgatttcaaaggcatgaatttcgaatacataccatttggtgctggaaggaggatttgtccgggcat 17248568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University