View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18646_low_1 (Length: 467)
Name: NF18646_low_1
Description: NF18646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18646_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 453
Target Start/End: Original strand, 33886654 - 33887080
Alignment:
| Q |
17 |
acttatgcggtcaccttgtctagtgggcaccactgctgctcactactctctacaacccttgagcaataaattaccgctttcacgcatttgaaacatcgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33886654 |
acttatgcggtcaccttgtctagtgggcaccactactgctcactactctctacaacccttgagcaataaattaccgctttcacgcatttgaaacatcgat |
33886753 |
T |
|
| Q |
117 |
aacacacattcaaaatgccgagtttgaatttaaatcgattatcgatgtcttgaatgcgtgaaaacctataatctctgctaagtaagtactaactcaccct |
216 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33886754 |
aacacacattcaaaatgctgagtttgaatttaaaacgattatcgatgtcttgaatgcgtgaaaacctataatctctgctaagtaagtactaact------ |
33886847 |
T |
|
| Q |
217 |
ctcctctcccctccccttgagcacactccataa------ctctctctgacactaaaactaaaaacgcacgcactctaannnnnnnccactactctctctt |
310 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
33886848 |
----------ctccccttgagcacactccataactctctctctctctgacactaaaactaaaaatgcacgcactctaatttttttccactactctctcta |
33886937 |
T |
|
| Q |
311 |
tctctcattcaagacattcaatgcaaacgaacccactcataacgaccctccaacggcatgcctctaacaatatcaaagttgtacctacaaacaacgcagc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33886938 |
tctctcattcaagacattcaatgcaaacgaacccactcataacgaccctccaacggcatgtctctaacaatatcaaagttgtacctacaaacaacgcagt |
33887037 |
T |
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| Q |
411 |
aaagttgttagttagttagggtttgattctgccactgcacagg |
453 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33887038 |
aaagttgttggttagttagggtttgattctgccactgcacagg |
33887080 |
T |
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