View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18646_low_2 (Length: 429)
Name: NF18646_low_2
Description: NF18646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18646_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 385
Target Start/End: Complemental strand, 34361131 - 34360763
Alignment:
| Q |
6 |
tattatccctataagatgcagcagaagttggacttctaaaagcctcagtccatgctagcatcttgaacagaactaagtaaacatgcattgtatacataga |
105 |
Q |
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| T |
34361131 |
tattatccctataagatgcagcagaagttggacttttaaaagcctcagtccatgctagcatcttgaacagagctaagtaaacatgcattgtatacataga |
34361032 |
T |
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| Q |
106 |
gataggaaaagagaagagttgcaacttctcagtttcaaactatnnnnnnnggatccgttgaaatgaagtacttcattcataaaagtaagatgctcaagcc |
205 |
Q |
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| T |
34361031 |
gataggaaaagggaagagttgcaacttctcactttcaaactat-aaaaaaggatccaatgaaatgaagtacttcattcataaaagtaagatgctcaagcc |
34360933 |
T |
|
| Q |
206 |
tccatactaaaataataggataaagcctcctccatattgttcaagccacatgaatttcaacagc-tataccttgaaatgcatggttaacttaattgttta |
304 |
Q |
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| T |
34360932 |
tccatactaaaataataggataaagtctcctccatgttgttcaagc-----------caacagcttataccctgaaatgcatggttaacataattgttta |
34360844 |
T |
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| Q |
305 |
acaggatcagtctttgtatagcggcaattgagaaattgtatgcggcgggagtggtttaagtggattgatagaccaaatgac |
385 |
Q |
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| T |
34360843 |
acaggatcagtctttgtatagcgggaattgagaaactgtatgcggcgggagtggtttaagtgggttgatagaccaaatgac |
34360763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 5584814 - 5584661
Alignment:
| Q |
109 |
aggaaaagagaagagttgcaacttctcagtttcaaactatnnnnnnnggatccgttgaaatgaagtacttcattcataaaagtaagatgctcaagcctcc |
208 |
Q |
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| T |
5584814 |
aggaaaggagaagagttgcaacttctcactttcaaactataaaaaaaggtacc-----aaggaagtgcttcattcacaaaagtaagatgctcaagccttc |
5584720 |
T |
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| Q |
209 |
atactaaaataataggataaagcctcctccatattgttcaagccacatgaatttcaaca |
267 |
Q |
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| T |
5584719 |
atactaaaataataggataaagtctcctccatgttgttcctaccacatgaatttcaaca |
5584661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 25291753 - 25291656
Alignment:
| Q |
9 |
tatccctataagatgcagcagaagttggacttctaaaagcctcagtccatgctagcatcttgaacagaactaagtaaacatgcattgtatacatagag |
106 |
Q |
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| T |
25291753 |
tatccctataagatgcagcaaaagttggacttctaaaagccttagttcatgctaacatcttcaacagaacaaagtaaagatacatcgcatacatagag |
25291656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 303
Target Start/End: Complemental strand, 25291522 - 25291386
Alignment:
| Q |
167 |
aatgaagtacttcattcataaaagtaagatgctcaagcctccatactaaaataataggataaagcctcctccatattgttcaagccacatgaatttcaac |
266 |
Q |
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|||||||| |||||| | ||||||| || ||||||||| |||||||||||| ||| || ||| ||||||||| |||||| || |||||||||||||| |
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| T |
25291522 |
aatgaagtgcttcatcaacaaaagtaggagactcaagccttcatactaaaatagtagaatcaagtctcctccatgttgttcctgctacatgaatttcaac |
25291423 |
T |
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| Q |
267 |
agctataccttgaaatgcatggttaacttaattgttt |
303 |
Q |
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| T |
25291422 |
agctataccatgaaatacatagttaacataattgttt |
25291386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 31807861 - 31807808
Alignment:
| Q |
9 |
tatccctataagatgcagcagaagttggacttctaaaagcctcagtccatgcta |
62 |
Q |
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| T |
31807861 |
tatccctataagatgcagcaaaagttgaacttctaaaagccttagtccatgcta |
31807808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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