View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18646_low_4 (Length: 321)

Name: NF18646_low_4
Description: NF18646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18646_low_4
NF18646_low_4
[»] chr2 (5 HSPs)
chr2 (14-305)||(44905022-44905313)
chr2 (12-305)||(28166176-28166468)
chr2 (25-210)||(37952800-37952978)
chr2 (37-99)||(37958642-37958704)
chr2 (37-99)||(37896498-37896560)
[»] chr1 (2 HSPs)
chr1 (12-305)||(13228519-13228811)
chr1 (12-305)||(40768127-40768419)
[»] chr7 (1 HSPs)
chr7 (14-305)||(38757159-38757449)
[»] chr4 (2 HSPs)
chr4 (19-305)||(34538647-34538931)
chr4 (12-305)||(11149264-11149560)
[»] chr3 (2 HSPs)
chr3 (12-302)||(11527875-11528159)
chr3 (27-262)||(39712277-39712508)
[»] chr5 (1 HSPs)
chr5 (12-192)||(6535336-6535514)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 44905022 - 44905313
Alignment:
Q  14 tcatcatcgtatctatgtattgctttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44905022 tcatcatcgtatctatgtattgctttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttat 44905121  T
Q  114 cgttgtcatttttcttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattgccttaacaaaatgttcatgtt 213  Q
    ||||| |||||||||||||||||| || ||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44905122 cgttgccatttttcttccattgatccattacatatttttttcatcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatgttcatgtt 44905221  T
Q  214 ctttggtgatttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattctcaagtcctttt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44905222 ctttggtgatttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattttcaagtcctttt 44905313  T

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Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 28166176 - 28166468
Alignment:
Q  12 catcatcatcgtatctatgtattgctttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttcctt 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||    
T  28166176 catcatcatcgtatctatgtattgctttaactatactagaccaaacgaaagcacaagttacgacaaatttagttagaaattgtggcacgttgatttcttt 28166275  T
Q  112 atcgttgtcatttttcttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattgccttaacaaaatgttcatg 211  Q
    ||||||| ||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||    
T  28166276 atcgttgccatttttcttccattgattcagtacatatttttt-catcccctcaatttcttcttttccaaaaacaataattgctttaataaaatcttcatg 28166374  T
Q  212 ttctttggtgatttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattctcaagtcctttt 305  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28166375 ttctttggtggtttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcactgaagaaaacattctcaagtcctttt 28166468  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 37952978 - 37952800
Alignment:
Q  25 tctatgtattgctttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttatcgttgtcattt 124  Q
    |||||| ||||||||||| | |||| ||||||  |||||||||||||| ||| ||||||||||||||||||| || | |||||| | |      || |||    
T  37952978 tctatgcattgctttaaccaaactaacccaaacaaaagcacaagttacaacatatttagatagaaattgtggtgcttggatttcttga------tctttt 37952885  T
Q  125 ttcttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattgccttaacaaaatgttcat 210  Q
    |||||||||| ||||| |||  |       |||||||||  ||||||||||||| ||||||||||||||||||||| ||| |||||    
T  37952884 ttcttccattcattcaataccca-ttttttcatcccctcgatttcttcttttccgaaaacaataattgccttaacacaatcttcat 37952800  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 37958704 - 37958642
Alignment:
Q  37 tttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgc 99  Q
    |||||| ||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||    
T  37958704 tttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgc 37958642  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 37896498 - 37896560
Alignment:
Q  37 tttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgc 99  Q
    |||||| | ||||| ||||| |||| |||||||||| |||||||||||||  |||||||||||    
T  37896498 tttaaccaaactagaccaaatgaaaccacaagttacaacaaatttagataacaattgtggcgc 37896560  T

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Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 13228811 - 13228519
Alignment:
Q  12 catcatcatcgtatctatgtattgctttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttcctt 111  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13228811 catcatcatcgtatctatgtattgctttaaatatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttcctt 13228712  T
Q  112 atcgttgtcatttttcttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattgccttaacaaaatgttcatg 211  Q
    ||||||| ||||||||||||||||||||||||||||       |||||||||| |||||||||||| |||||||||||||| ||||||||||| ||||||    
T  13228711 atcgttgccatttttcttccattgattcagtacata-ttttttcatcccctcaatttcttcttttctaaaaacaataattgtcttaacaaaatcttcatg 13228613  T
Q  212 ttctttggtgatttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattctcaagtcctttt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  13228612 ttctttggtgatttgagtttcagcaatgagtctaggcttccatgattttcttattgcaaaatagtcactgaagaaaacattctcaagttctttt 13228519  T

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Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 40768127 - 40768419
Alignment:
Q  12 catcatcatcgtatctatgtattgctttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttcctt 111  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40768127 catcatcatcatatctatgtattgctttaactatactagcccaaacgaaatcacaagttacgacaaatttagatagaaattgtggcacgttgatttcctt 40768226  T
Q  112 atcgttgtcatttttcttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattgccttaacaaaatgttcatg 211  Q
    ||||||| ||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  40768227 atcgttgccatttttcttccattgattcagtacatatttttt-catcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttcatg 40768325  T
Q  212 ttctttggtgatttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattctcaagtcctttt 305  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  40768326 ttctttggtgatttgagtttcaacaatgagtctaggcttccataattttctcattgcaaaatagtcactgaagaaaacattctcatgtcctttt 40768419  T

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Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 38757159 - 38757449
Alignment:
Q  14 tcatcatcgtatctatgtattgctttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38757159 tcatcatcgtatctatgtattgctttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgttgcgcgttgatttccttat 38757258  T
Q  114 cgttgtcatttttcttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattgccttaacaaaatgttcatgtt 213  Q
    ||||| ||||||||||||||||||||||| ||||       |||||||||| ||||||||||| |||||||||||||||  |||||||||| ||||||||    
T  38757259 cgttgccatttttcttccattgattcagtgcatatttttt-catcccctcaatttcttctttttcaaaaacaataattgttttaacaaaatcttcatgtt 38757357  T
Q  214 ctttggtgatttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattctcaagtcctttt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  38757358 ctttggtgatttgagtttcagcaatgagtctaggcttccatgattttctcattgtaaaatggtcactgaagaaaacattctcaagtcctttt 38757449  T

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Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 34538647 - 34538931
Alignment:
Q  19 atcgtatctatgtattgctttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttatcgttg 118  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  34538647 atcgtaactatgtattgctttaactatactagcccaaacgaaagcataagttatgacaaatttacatagaaattgtggcgcgttgatttccttatcgttg 34538746  T
Q  119 tcatttttcttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattgccttaacaaaatgttcatgttctttg 218  Q
     ||||||| ||| ||||||| ||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34538747 ccattttttttc-attgattaagtacatatttttt-catcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttcatgttctttg 34538844  T
Q  219 gtgatttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattctcaagtcctttt 305  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  34538845 gtgatttgagtttcagtaatgagtctaggcttccatgattttctcattgcaaaatagtcaccgaagaaaacattctcaagtcctttt 34538931  T

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Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 11149560 - 11149264
Alignment:
Q  12 catcatcatcgtatctatgtattgctttaactata----ctagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgattt 107  Q
    ||||||||||||||||||||||| |||||||||||    ||| |||||  ||||||||||||||||||||| | |||||||||||||||| |||||||||    
T  11149560 catcatcatcgtatctatgtattactttaactatatatactaacccaagcgaaagcacaagttacgacaaaatgagatagaaattgtggcacgttgattt 11149461  T
Q  108 ccttatcgttgtcatttttcttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattgccttaacaaaatgtt 207  Q
    |||||| |||| |||||||||||||||||||||| |||||       |||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  11149460 ccttattgttgccatttttcttccattgattcagcacatatttttt-catcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatctt 11149362  T
Q  208 catgttctttggtgatttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattctcaagtcctttt 305  Q
    |||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  11149361 catgttctttggtgatttcagtttcagcaatgagtctattcttccatgattttctcattgcaaaatagtcactgaagaaaatattctcaagtcctttt 11149264  T

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Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 11527875 - 11528159
Alignment:
Q  12 catcatcatcgtatctatgtattgctttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttcctt 111  Q
    |||||||||||| ||||||||||| ||||  |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  11527875 catcatcatcgtttctatgtattgttttagttatactagcccaaacgaaagcacaagttacaacaaatttagatagaaattgtggcgcgttgatttcgtt 11527974  T
Q  112 atcgttgtcatttttcttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattgccttaacaaaatgttcatg 211  Q
    |||      ||||||||||||||||||||| |||||       ||||| |||| ||||||||||||||||||||||||||||||||||||||| || |||    
T  11527975 atc------atttttcttccattgattcagcacatatttttttcatcctctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttgatg 11528068  T
Q  212 ttctttggtgatttgagtttcagcaatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattctcaagtcct 302  Q
    |||||   || ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||  | |||||||||| ||||||||||    
T  11528069 ttcttccttgctttgactttcagcaatgagtctatgcttccatgattttctcattacaaaatagtcccttaagaaaacatcctcaagtcct 11528159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 262
Target Start/End: Original strand, 39712277 - 39712508
Alignment:
Q  27 tatgtattgctttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttatcgttgtcattttt 126  Q
    |||| ||||||| ||| |||||||||||||  |||||| ||||||| ||||||||||||| ||||| |||| |||||||||| |||   || ||||||||    
T  39712277 tatgcattgcttcaaccatactagcccaaacaaaagcagaagttacaacaaatttagatataaattttggcacgttgatttcatta---ttatcattttt 39712373  T
Q  127 cttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattgccttaacaaaatgttcatgttctttggtgatttg 226  Q
    ||||||||||||||| ||  |       |||||||||| ||||||||||||||||| |||||||| |||||| | ||| ||||||||||   ||| ||||    
T  39712374 cttccattgattcagcaccca-ttttttcatcccctcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttg 39712472  T
Q  227 agtttcagcaatgagtctaggcttccatgattttct 262  Q
    | ||| |||||||||||||  |||||||||||||||    
T  39712473 actttgagcaatgagtctaaacttccatgattttct 39712508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 6535336 - 6535514
Alignment:
Q  12 catcatcatcgtatctatgtattgctttaactatactagcccaaaggaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttcctt 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| |||    
T  6535336 catcatcatcgtatctatgtattgctttaactatactagctcaaacgaaagcacaaattacggcaaatttagatagaaattgtggcgcgttgattttctt 6535435  T
Q  112 atcgttgtcatttttcttccattgattcagtacatannnnnnncatcccctcagtttcttcttttccaaaaacaataattg 192  Q
    || |||| ||||||||||||||||||| ||||||||       ||||||| || |||||||||||||||||||||||||||    
T  6535436 attgttgccatttttcttccattgattaagtacata-ttttttcatcccc-caatttcttcttttccaaaaacaataattg 6535514  T

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