View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18647_high_17 (Length: 228)

Name: NF18647_high_17
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18647_high_17
NF18647_high_17
[»] chr7 (1 HSPs)
chr7 (12-213)||(31627290-31627488)
[»] chr4 (3 HSPs)
chr4 (95-131)||(27952494-27952530)
chr4 (98-134)||(5484360-5484396)
chr4 (95-131)||(47397907-47397943)
[»] chr5 (1 HSPs)
chr5 (97-127)||(8235462-8235492)
[»] chr3 (1 HSPs)
chr3 (97-127)||(45746504-45746534)
[»] chr2 (1 HSPs)
chr2 (95-129)||(17524377-17524411)
[»] chr8 (1 HSPs)
chr8 (95-127)||(29341285-29341317)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 31627488 - 31627290
Alignment:
Q  12 aagaatatgacgattattacacaaatcaattttaccnnnnnnncactacttccttcagtcactattataagaagnnnnnnnnnttattttttagatttat 111  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||          |||||||||| ||||||    
T  31627488 aagaatatgacgattattacacaaatcaattttaccaaaaaaacactacttccttctgtcactattataagaa---aaaaaaattattttttaaatttat 31627392  T
Q  112 tgaataattaatatatgtgacctcggagtgagtaagttataagctgaaaaatgtttctcaccaaacatagcttaaatataattccttccattatgtgatg 211  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  31627391 tgaataattgatatatgtgacctcggagtgagtaagttataagctgaaaaatgtttctcgccaaacatagcctaaatataattccttccattatgtgatg 31627292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 27952494 - 27952530
Alignment:
Q  95 ttattttttagatttattgaataattaatatatgtga 131  Q
    |||||||||||||||||||||||||| ||||||||||    
T  27952494 ttattttttagatttattgaataatttatatatgtga 27952530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 5484360 - 5484396
Alignment:
Q  98 ttttttagatttattgaataattaatatatgtgacct 134  Q
    |||||||| |||||||||||||||||||||| |||||    
T  5484360 ttttttaggtttattgaataattaatatatgagacct 5484396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 47397907 - 47397943
Alignment:
Q  95 ttattttttagatttattgaataattaatatatgtga 131  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  47397907 ttattttttagatttattcaataaataatatatgtga 47397943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 8235492 - 8235462
Alignment:
Q  97 attttttagatttattgaataattaatatat 127  Q
    |||||||||||||||||||||||||||||||    
T  8235492 attttttagatttattgaataattaatatat 8235462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 45746504 - 45746534
Alignment:
Q  97 attttttagatttattgaataattaatatat 127  Q
    |||||||||||||||||||||||||||||||    
T  45746504 attttttagatttattgaataattaatatat 45746534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 17524411 - 17524377
Alignment:
Q  95 ttattttttagatttattgaataattaatatatgt 129  Q
    |||||||||||||||||||||||||| ||||||||    
T  17524411 ttattttttagatttattgaataatttatatatgt 17524377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 29341285 - 29341317
Alignment:
Q  95 ttattttttagatttattgaataattaatatat 127  Q
    |||||||| ||||||||||||||||||||||||    
T  29341285 ttatttttaagatttattgaataattaatatat 29341317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University