View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18647_high_3 (Length: 445)
Name: NF18647_high_3
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 23 - 440
Target Start/End: Complemental strand, 40617252 - 40616835
Alignment:
| Q |
23 |
aggaggtgcttctcagtgcgatgagatattccatagcaactcagaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggtgtggaaaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40617252 |
aggaggtgcttctcagtgcgatgagatattccatagcaactcggaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggtgtggaaaa |
40617153 |
T |
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| Q |
123 |
tttattagaattagggcgtcgaacgggaggactgtgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40617152 |
tttattagaattagggcgtcgaacgggaggactgtgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagc |
40617053 |
T |
|
| Q |
223 |
caccttgtcgtaacaatattgtggatggatctgcagctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggc |
322 |
Q |
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| T |
40617052 |
caccttgtcgtaacaatattgtggatggatctgcagctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggc |
40616953 |
T |
|
| Q |
323 |
ttgaaagaatactcaagtagtggctaatatatataattaataagactaagcttaatttgcataaggtaaaattaagcttgtgtgtgttatttcgtcattt |
422 |
Q |
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| T |
40616952 |
ttgaaagaatactcaagtagtggctaatatatataattaataagactaagcttaatttgcataaggtaaaattaagcttgtgtgtgttatttcgtcattt |
40616853 |
T |
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| Q |
423 |
tgttggtcctttgcttct |
440 |
Q |
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| T |
40616852 |
tgttggtcctttgtttct |
40616835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 59 - 341
Target Start/End: Complemental strand, 40627927 - 40627646
Alignment:
| Q |
59 |
caactcagaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggtgtggaaaatttattagaattagggcgtcgaacgggaggactgtg |
158 |
Q |
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| T |
40627927 |
caactcggaaagagtggtggctttgtccactgggtggtacaacggaggttcaagatgtggaaaaatgattagaatcacggcgaggaacgggaggagtgtg |
40627828 |
T |
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| Q |
159 |
accgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagccaccttgtcgtaacaatattgtggatggatctgcag |
258 |
Q |
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| T |
40627827 |
acggcgaaagtggtggaccagtgtgattcggtgaatggatgtgataaggaacacgcaggtcagccaccttgtcataacaatattgtggatggatctgtat |
40627728 |
T |
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| Q |
259 |
ctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaaagaatactcaagta |
341 |
Q |
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| T |
40627727 |
ctgtgtggaatgcattagggttgaatacagatgatggtgtagtaccagttacatggtctatggctt-aaaaattactcaagta |
40627646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 147 - 327
Target Start/End: Complemental strand, 40610633 - 40610453
Alignment:
| Q |
147 |
gggaggactgtgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagccaccttgtcgtaacaatattgtgg |
246 |
Q |
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||||||| |||||| ||||| ||||| || ||||||||||||||||||| |||||||| || |||||| | |||||||||||||||||||||||||||| |
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| T |
40610633 |
gggaggagtgtgacggcgaaggtggtggatgaatgtgattcagtgaatggttgtgatgaggagcatgcatggcagccaccttgtcgtaacaatattgtgg |
40610534 |
T |
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| Q |
247 |
atggatctgcagctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaa |
327 |
Q |
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| T |
40610533 |
atggatctgtagctgtgtggaatgcattagggttaaatactgatgatggtgtggtaccagttacatggtctatagcttgaa |
40610453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 402
Target Start/End: Complemental strand, 40610406 - 40610364
Alignment:
| Q |
360 |
taataagactaagcttaatttgcataaggtaaaattaagcttg |
402 |
Q |
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| T |
40610406 |
taataagaacaagcttaatttgcataaggttaaattaagcttg |
40610364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 40641268 - 40641337
Alignment:
| Q |
51 |
ttccatagcaactcagaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggtgtggaa |
120 |
Q |
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| T |
40641268 |
ttccatagctactcagaaagagtagtggcgctgtccactgggtggtacaacggaggttcaaggtgtggaa |
40641337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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