View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18647_high_7 (Length: 353)
Name: NF18647_high_7
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 23257631 - 23257323
Alignment:
| Q |
1 |
tgtacaagactttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttggtttaattttatttttggattgtagaataggaaatgtcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23257631 |
tgtacaagactttcaagatgatgaggtatcactatggaacttctaaacttaatgtgtttggtttaattttatttttggattgtagaataggaaatgtcta |
23257532 |
T |
|
| Q |
101 |
tactacaacctttttaattggtagcataaattctgcatatacataggttgaaattgaaaaggagtttctctttatagcttttatgtggattattaaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23257531 |
tactacaacctttttaattggtagcataaattctgcatatacataggttgaaattgaaaaggagtttctctttatagcttttatgtggattattaaatca |
23257432 |
T |
|
| Q |
201 |
ctaatcaagcttaaagtgcatctgacttttattatatatgaaagaaaataatttgcaatttccaaatatagtctatcttgtcttattattcttatctttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
23257431 |
ctaatcaagcttaaagtgcatctgacttttattatatatgaaagaacataatttgcaatttccaaatatagtctatcttgtcttatttttcttctctttt |
23257332 |
T |
|
| Q |
301 |
gtaggactt |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
23257331 |
gtaggactt |
23257323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 23251656 - 23251405
Alignment:
| Q |
3 |
tacaagactttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttggtttaat-tttatttttggattgtagaataggaaatgtctat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| || || |||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
23251656 |
tacaagactttcaagatgatgaggtatcactatggaacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtctat |
23251557 |
T |
|
| Q |
102 |
actacaacctttttaattggtagcataaattctgcatatacataggttgaaattgaaaaggagtttctctttatagcttttatgtggattattaaatcac |
201 |
Q |
| |
|
||||||||| ||| |||||||||| |||| ||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
23251556 |
actacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaatttatttttatagcttttatgtgaattattaaatcac |
23251457 |
T |
|
| Q |
202 |
taatcaagcttaaagtgcatctga---cttttattatatatgaaagaaaata |
250 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
23251456 |
taatcaagcgtaaagtgcatctcatcctttttattatatatgaaagaaaata |
23251405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 23247246 - 23247001
Alignment:
| Q |
1 |
tgtacaagactttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttggtttaattttatttttggattgtagaataggaaatgtcta |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||| || |||| ||| ||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
23247246 |
tgtacaagattttcaagatgatgaggtatcactatggaacttttaaatttaatgtcttttgtttacttttctttttggattgtaggataggaaatgtcta |
23247147 |
T |
|
| Q |
101 |
tactacaacctttttaattggtagcataaattctgcatatacataggttgaaattgaaaaggagtttctctttatagc-ttttatgtggattattaaatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||| |||||||| |||||||| || ||||||||| |
|
|
| T |
23247146 |
tactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttctttttatagctttttatgt-gaatattaaatc |
23247048 |
T |
|
| Q |
200 |
actaatcaagcttaaagtgcatc---tgacttttattatatatgaaa |
243 |
Q |
| |
|
||||||| ||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
23247047 |
actaatcgagcatatagtgcatctcatgacttttattatatatgaaa |
23247001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 23266188 - 23266061
Alignment:
| Q |
5 |
caagactttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttggtttaattttatttttggattgtagaataggaaatgtctatact |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23266188 |
caagactttcaagatgatgaggtatcactatggaacttctaaattttctttgtttggtttaactttatttttggattgtagaataggaaatgtctatact |
23266089 |
T |
|
| Q |
105 |
acaacctttttaattggtagcataaatt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
23266088 |
acaacctttttaattggtagcataaatt |
23266061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 23283266 - 23283160
Alignment:
| Q |
3 |
tacaagactttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttgg-tttaattttatttttggattgtagaataggaaatgtctat |
101 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||| || | | |||||| ||| |||| ||||||||||||||||| | |||||||||| |
|
|
| T |
23283266 |
tacaagactttcaagatgaagaggtatccctatggaacttctaaaattgaagagtttggttttgtttttttttttggattgtagaattgaaaatgtctat |
23283167 |
T |
|
| Q |
102 |
actacaa |
108 |
Q |
| |
|
||||||| |
|
|
| T |
23283166 |
actacaa |
23283160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 23289601 - 23289502
Alignment:
| Q |
11 |
tttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttggtttaattttatt--tttggattgtagaataggaaatgtctatactacaa |
108 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| ||||| | |||||||||||| |||| || ||||||||||| || | |||||||| |||||||| |
|
|
| T |
23289601 |
tttcaagatgaagaggtatcgctatggaacttctgaacttgaagtgtttggtttacttttttttgtttggattgtaaaacggaaaatgtctgtactacaa |
23289502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 23266056 - 23265982
Alignment:
| Q |
165 |
tttctctttatagcttttatgtggattattaaatcactaatcaagcttaaagtgcatctgacttttattatatatgaaagaa |
246 |
Q |
| |
|
||||| || |||||||||||||| ||| |||||||||||||||| | ||||||| ||||||||||||||||||||| |
|
|
| T |
23266056 |
tttcttttcatagcttttatgtgaatttttaaatcactaatcaatcataaagtg-------cttttattatatatgaaagaa |
23265982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University