View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18647_high_8 (Length: 349)
Name: NF18647_high_8
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 35901301 - 35900967
Alignment:
| Q |
14 |
attattctaaaacagcaaaagatgtactcatcccgttcggtaccaataggagatcctgtnnnnnnnnnnnnnntttagttcttggaaacaatatcaaagc |
113 |
Q |
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| T |
35901301 |
attattctaaaacagcaaaagatgtactcgtcccgttcggtaccaataggagatcctgtaaaaaaaaattaattttagttcttggaaacaatatcaaagc |
35901202 |
T |
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| Q |
114 |
attgcagtttccatggcataaattgcatatgagggaaaaaataaatggtcatgataaaagataaatcaagtaccattaatcaaggcaagtcaaatatata |
213 |
Q |
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| T |
35901201 |
attgcagtttccatggcataaattgcatatgagggaaaaaataaatggtcatgataaaagataaatcaagtaccattaatcaaggcaagtcaaatatata |
35901102 |
T |
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| Q |
214 |
gattaactaaactgtgcaactaatcgttttattatggctgaatattgaacattgatgtagtggcaatgttcatgattcagttaaacccataaacnnnnnn |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
35901101 |
gattaactaaactgtgcaactaatcgttttattatggctgaatattgaacattgatgcagtggcaatgttcatgattcagttaaa-ccataaacaaaaaa |
35901003 |
T |
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| Q |
314 |
ngcaagaaataacataggtacctgcccatcatattc |
349 |
Q |
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| T |
35901002 |
agcaagaaataacataggtacctgcccatcatattc |
35900967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 8347929 - 8347703
Alignment:
| Q |
14 |
attattctaaaacagcaaaagatgtactcatcccgttcggtaccaataggagatcctgtnnnnnnnnnnnnnn--tttagttcttggaaacaatatcaaa |
111 |
Q |
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| T |
8347929 |
attattctaaaacagcaaaagatgtactcatcttgtccggtaccaataggagatcctgcaaaaacaaaaattacttttagttcttggaaacaacatcaaa |
8347830 |
T |
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| Q |
112 |
gcattgcagtttccatggcataaattgcatatgaggg-aaaaaataaatggtcatgataaaagataaatcaagtac-----cattaatcaaggcaagtca |
205 |
Q |
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| T |
8347829 |
gcattgccatttccagggaataaattgcatatgggggcagcaaataaatggtcatgatataagataaatcaagcacctaatcattaatcaggacaagtga |
8347730 |
T |
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| Q |
206 |
aatatatagattaactaaactgtgcaa |
232 |
Q |
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|||| ||||||||||| |||||||||| |
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| T |
8347729 |
aatacatagattaacttaactgtgcaa |
8347703 |
T |
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