View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18647_high_9 (Length: 303)
Name: NF18647_high_9
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 30271999 - 30272284
Alignment:
| Q |
1 |
cataaactttgtgacaatagaaaactccatcactaaattgtagagtaaaaaggttggattcaaatacatgttttgcagcatgagctttaaggccatcaat |
100 |
Q |
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| T |
30271999 |
cataaactttgtgacaatagaaaactccatcactaaattgtagagtaaaaaggttggattcaaatacatgttttgcagcatgagctttaaggccatcaat |
30272098 |
T |
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| Q |
101 |
ccaactataaccaacaccatcactgaattgttccttctgcctgtataaaatgtgctgcatgaaaatgaatgtttcgatgttagtttcgcaaaccaatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30272099 |
ccaactataaccaacaccatcactgaattgttccttctgcctgtataaaatgtgctgcatgaaaatgaatgtttcaatgttagtttcgcaaaccaatttt |
30272198 |
T |
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| Q |
201 |
gcataaatcaatagacattgcagcaaattacttagtagtacctttggcagataaggattctcttcatcatcaaaggccttcctcag |
286 |
Q |
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| T |
30272199 |
gcataaatcaatagacattgcagcaaattacttagtagtacctttggcagataaggattctcttcatcatcgaaggccttcctcag |
30272284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 29359506 - 29359342
Alignment:
| Q |
8 |
tttgtgacaatagaaaactccatcactaaattgtagagtaaaaaggttggattcaaatacatgttttgcagcatgagctttaaggccatcaatccaacta |
107 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||| |
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| T |
29359506 |
tttgtgacaatagaaaaatccatcactaaattgtagagtaaaaaggttggattcaa-tacatgttttgcacaatgagctttaaggtcgtcaatccaacta |
29359408 |
T |
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| Q |
108 |
taaccaacaccatcactgaattgttccttctgcctgtataaaatgtgctgcatgaaaatgaatgtt |
173 |
Q |
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| T |
29359407 |
taaccaacaccattactgaattgttccttctgcctgcataaaatgtgctgcatgaaaatgaatgtt |
29359342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 25964718 - 25964815
Alignment:
| Q |
65 |
tacatgttttgcagcatgagctttaaggccatcaatccaactataaccaacaccatcactgaattgttccttctgcctgtataaaatgtgctgcatga |
162 |
Q |
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| T |
25964718 |
tacatgttttgcagcatggtccttaattccatcaatccagccatagccaactccatcactgaactgttccttctgtctatataaaatgtgctgcatga |
25964815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 39546063 - 39545999
Alignment:
| Q |
93 |
ccatcaatccaactataaccaacaccatcactgaattgttccttctgcctgtataaaatgtgctg |
157 |
Q |
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| T |
39546063 |
ccatcaatccaactgtatccgacaccatcactgaactgttccttctgcctgtacaatatgtgctg |
39545999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 25964904 - 25964950
Alignment:
| Q |
237 |
agtacctttggcagataaggattctcttcatcatcaaaggccttcct |
283 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
25964904 |
agtaccttaggcagataaggattctcttcatcatcaaaagccttcct |
25964950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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