View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18647_low_1 (Length: 585)
Name: NF18647_low_1
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 79 - 574
Target Start/End: Complemental strand, 37495586 - 37495091
Alignment:
| Q |
79 |
aagtgttttgattaagaatgaacaaaacaatgtattcacaatgggactaccttagcttaccaatcagaatcatatcctgcaaggaaaattttgtgattgc |
178 |
Q |
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| T |
37495586 |
aagtgttttgattaagaatgaacaaaacaatgtattcacaatgggactaccttagcttaccaatcagaatcatatcctgcaaggaaaattttgtgattgc |
37495487 |
T |
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| Q |
179 |
agataatgtttagtggtcgctcaaaagaggatcatagtcatatgcttcacctgctttaacaaatctacctttcacacgttttcttgtatcagcccttgct |
278 |
Q |
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| T |
37495486 |
agataatgtttagtggtcgctcaaaagaggatcatagtcatatgcttcacctgctttaacaaatctacctttcacacgttttcttgtatcagcccttgct |
37495387 |
T |
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| Q |
279 |
ttgcgagacgcatatcttatttgcttaccaaacctgatttgttgtaccaagtcaacttataaatttaagaatcatatgatagttaacgcttgatgagttg |
378 |
Q |
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| T |
37495386 |
ttgcgagacgcatatcttatttgcttaccaaacctgatttgttgtaccaagtcaacttataaatttacgaatcatatgatagttaacgctcgatgagttg |
37495287 |
T |
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| Q |
379 |
ttaactttagaatcatatgatagttaacacagtccaaataactgttagcactctaattcacttatttatgttttacagtattattatacaatagagaata |
478 |
Q |
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| T |
37495286 |
ttaactttagaatcatatgatagttaacacagtccaaataactgttagcactctaattcacttatttatgttttacagtattattatacaatagagaata |
37495187 |
T |
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| Q |
479 |
aacttcaatacacatttatatataatgcaggaagaaacaaagaaaataacaaaatagttctagatttgtagacacttctaatgacttcagcctatg |
574 |
Q |
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| T |
37495186 |
aacttcaatacacatttatatataatgcaggaagaaacaaagaaaataacaaaatagttctagatttgtagacacttctaatgacttcagcctatg |
37495091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 37495680 - 37495619
Alignment:
| Q |
19 |
ttaacatgtctgtaccaaccaccaaagtagtcaagttttgaataataatctggctgcattaa |
80 |
Q |
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| T |
37495680 |
ttaacatgtctgtaccaaccacctaagtagtcaagttttgaataataatctggctgcattaa |
37495619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 29461890 - 29461823
Alignment:
| Q |
246 |
cctttcacacgttttcttgtatcagcccttgctttgcgagacgcatatcttatttgcttaccaaacct |
313 |
Q |
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| T |
29461890 |
cctttcacacgttttctgacatcagcccttgccttccgagaagcatatcttactttcttatcaaacct |
29461823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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