View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18647_low_13 (Length: 251)
Name: NF18647_low_13
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_low_13 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 3104100 - 3103847
Alignment:
| Q |
13 |
tcatcacagcaccaccggcatggtatgttgtttcgtcttttcaatttcccatctctcattcttcttcctctcttcaaa---------------tccaaaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3104100 |
tcatcacagcaccaccggcatggtatgttgtttcgtcttttcaatttcccttctctcattcttcttcctctcttcaaaaactcattctccaaatccaaaa |
3104001 |
T |
|
| Q |
98 |
ccattcacaaaaccctcagattttcatcatccacagcacttgcactctcttcctcagaaacccatttcacaaaaccctcaaaaatctcatcttttgaacc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3104000 |
ccattcacaaaaccctcagattttcatcatccacagcacttgcactctcttcctcagaaacccatttcacaaaaccctcaaaaatctcatcttttgaacc |
3103901 |
T |
|
| Q |
198 |
taacaccttcaaaatcctccaaaaactttatctttatcaaaacaacccttcact |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3103900 |
taacaccttcaaaatcctccaaaaactttatctttatcaaaacaacccttcact |
3103847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 3111068 - 3110869
Alignment:
| Q |
34 |
ggtatgttgtttcgtcttttcaatttcccatctctcattcttcttcctct----ctt--caaatccaaaaccattcac---aaaaccctcagattttcat |
124 |
Q |
| |
|
|||||||||| |||||| || || ||||| || ||||||||||||||||| ||| |||| |||||||||||||| || | |||| ||||| | |
|
|
| T |
3111068 |
ggtatgttgtgtcgtctcttgaaattcccttcactcattcttcttcctcttcctctttccaaaaccaaaaccattcacttcaacagattcaggttttcgt |
3110969 |
T |
|
| Q |
125 |
catccacagcacttgcactctcttcctcagaaacccatttcacaaaaccctcaaaaatctcatcttttgaacctaacaccttcaaaatcctccaaaaact |
224 |
Q |
| |
|
| ||||| |||||||||||| |||||||||||||| | | |||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
3110968 |
cttccactacacttgcactctgttcctcagaaaccctatataaaaaacccttaaaaatctcatcttttaaccctaacaccttcaaaatcctcaaaaaact |
3110869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 41625888 - 41626026
Alignment:
| Q |
113 |
tcagattttcatcatccacagcacttgcactctcttc---ctcagaaacccatttcacaaaaccctcaaaaatctcatcttttgaacctaacaccttcaa |
209 |
Q |
| |
|
|||| |||||||| |||||||||||||||| ||||| ||| |||||||||||||||||||| ||||| ||||||||| | |||||||||| | | |
|
|
| T |
41625888 |
tcaggttttcatcttccacagcacttgcacaatcttctacctcggaaacccatttcacaaaaccttcaaattcttcatcttttcatcctaacacctccca |
41625987 |
T |
|
| Q |
210 |
aatcctccaaaaactttatctttatcaaaacaacccttc |
248 |
Q |
| |
|
|||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
41625988 |
aatcctccaaaaacttcacctttatcgaaacaacccttc |
41626026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 41625791 - 41625847
Alignment:
| Q |
34 |
ggtatgttgtttcgtcttttcaatttcccatctctcattcttcttcctctcttcaaa |
90 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41625791 |
ggtatgttgtttcgtctcttcaatttcccatctcattttcttcttcctctcttcaaa |
41625847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 40174034 - 40174113
Alignment:
| Q |
156 |
aacccatttcacaaaaccctcaaaaatctcatcttttgaacctaacaccttcaaaatcctccaaaaactttatctttatc |
235 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||| |||||||||| ||||| |||||||||||| | ||||||| |
|
|
| T |
40174034 |
aacccatttcacaaaaccttgaaattcttcatcttttgaccctaacacctccaaaagtctccaaaaacttcacctttatc |
40174113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University