View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18647_low_14 (Length: 250)
Name: NF18647_low_14
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 18507007 - 18507169
Alignment:
| Q |
1 |
cagggtttactaaaggttactgaagatggtttcagtgttatcctttcacaagtaaatggttctcaattaatgtaagttttagagaaactattcattatga |
100 |
Q |
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| T |
18507007 |
cagggtttactaaaggttacagaagatggtttcagtgttatcctttcacaagtaaatggttctcaattaatgtaagttttagacaaataattcattatga |
18507106 |
T |
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| Q |
101 |
gtatattgcttttctgaataattcagttcatccatgtttagattaagtaatacaaatgatttt |
163 |
Q |
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| T |
18507107 |
gtatattgcttttctgttttgtttagttcatccatgcttagattaagtaatacaaatgatttt |
18507169 |
T |
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 18507189 - 18507278
Alignment:
| Q |
154 |
aaatgattttaacacatcactttttatgtccaaaattttaagaatagggtatatgatcctcaataaaatgttctgtccaatatattcttc |
243 |
Q |
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| T |
18507189 |
aaatgattttaacacatcactttttgtgtctaaaattttaagaatagggtatatgatcctcacttatatgttctgtccaatatattcttc |
18507278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 18513448 - 18513528
Alignment:
| Q |
1 |
cagggtttactaaaggttactgaagatggtttcagtgttatcctttcacaagtaaatggttctcaattaatgtaagtttta |
81 |
Q |
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| T |
18513448 |
cagggtttactcaaggttacagaagatggtttcagtgttatcctttcacaagtgaatggttctcaattaatgtgagtttta |
18513528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 18487103 - 18487154
Alignment:
| Q |
22 |
gaagatggtttcagtgttatcctttcacaagtaaatggttctcaattaatgt |
73 |
Q |
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| T |
18487103 |
gaagaaggtttcagtgttatcctttcacaagtaaatggttctcaattaatgt |
18487154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 37046359 - 37046495
Alignment:
| Q |
24 |
agatggtttcagtgttatcctttcacaagtaaatggttctcaattaatgtaagttttagagaaactattcattatgagtatattgcttttctgaataatt |
123 |
Q |
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| T |
37046359 |
agatggtttcagtgttatcctttcccaagtaaatgtttctcaattaatgtgagtttcaaacaaataattca-tatgtgtacattgcttttctgttttgtt |
37046457 |
T |
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| Q |
124 |
cagttcatccatg-tttagattaagtaatacaaatgat |
160 |
Q |
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| T |
37046458 |
aagttcattcatgctttagattaaataatacaaatgat |
37046495 |
T |
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