View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18647_low_15 (Length: 247)
Name: NF18647_low_15
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 45314991 - 45315205
Alignment:
| Q |
13 |
catcaatgttatagggacaacagaaagaaggtgaaaagaaatgatgaaaaatgaattatggggatctgagtatatagctgaggtgatgaggacctgcatg |
112 |
Q |
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| T |
45314991 |
catcaatgttatagggacaacagaaagaaggtgaaaagaaatgatgaaaaatgaattatggggatctgagtatatagctgaggtgatgaggacctgcatg |
45315090 |
T |
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| Q |
113 |
ctatgtgctttttcaagaaggggtggcttacgtacattcacatggttaatctggcagagtctggtcgattggaccatggtcctagctccatttctgtcct |
212 |
Q |
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| T |
45315091 |
ctatgtgctttttcaagaaggggtggcttacatacattcacat-gttaatccggcagagtctggtcgattggaccatggtcctagctccatttctgtcct |
45315189 |
T |
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| Q |
213 |
ttcgtatgtcctcatc |
228 |
Q |
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| T |
45315190 |
ttcgtatgtcctcatc |
45315205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 27760925 - 27761147
Alignment:
| Q |
13 |
catcaatgttatagggacaacagaaagaaggtgaaaagaaatgatgaaaaatgaattatggggatctg-------agtatatagctgaggtgatgaggac |
105 |
Q |
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| T |
27760925 |
catcaatgttatagggacaacagaaagaaggtgaaaagaaaggatgaaaaatgaattatggggatctgaattctgagtatatagctgaagtgatgaggac |
27761024 |
T |
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| Q |
106 |
ctgcatgctatgtgctttttcaagaaggggtggcttacgtacattcacatggttaatctggcagagtctggtcgattggaccatggtcctagctccattt |
205 |
Q |
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| T |
27761025 |
ctgcatgctatgtgctttttcaagaagggatagcttacatacattcacatggttaatccagcagaatctgacagattggaccatggtcctagctccattt |
27761124 |
T |
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| Q |
206 |
ctgtcctttcgtatgtcctcatc |
228 |
Q |
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| T |
27761125 |
ctgtccttttatgtgtcctcatc |
27761147 |
T |
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