View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18647_low_16 (Length: 238)
Name: NF18647_low_16
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23872942 - 23872722
Alignment:
| Q |
1 |
taaattaatactcatgacctagatggtgacatctgaaccattaaagcacattacattatttgctaatgattttaaaatttgttagattttgttagggaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23872942 |
taaattaatactcatgacctagatggtgacatatgaaccattaaagcacattacattatttgctaatgattttaaaatttgttagattttgttagggaat |
23872843 |
T |
|
| Q |
101 |
tattttccttaatcttttccaccatcttctctttgacaagccttctcattattttaccagaaggtgattttggtatagcttccacaaagtgaaccactct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23872842 |
tattttccttaatcttttccaccatcttctctttgacaagccttctcattattttaccagaaggtgattttggtatagcttccacaaagtgaaccactct |
23872743 |
T |
|
| Q |
201 |
cactttcttgtaatgagcagc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23872742 |
cactttcttgtaatgagcagc |
23872722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 34320537 - 34320479
Alignment:
| Q |
158 |
cagaaggtgattttggtatagcttccacaaagtgaaccactctcactttcttgtaatga |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
34320537 |
cagaaggtgactttggtatagcttccacaaagtgcaccactcttgctttcttgtaatga |
34320479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 34320660 - 34320549
Alignment:
| Q |
19 |
ctagatggtgacatctgaaccattaaag-cacattacattatttgctaatgattttaaaatttgttagattttgttagggaattattttccttaatcttt |
117 |
Q |
| |
|
||||||||||| || ||| |||| ||| ||||||||||| ||||||| |||||||| || |||| || |||||| ||||||| || ||| |||||| |
|
|
| T |
34320660 |
ctagatggtgaaatatgagccatcaaaatcacattacattttttgctagtgattttagaaagtgttggactttgtttgggaattttt---cttcatcttt |
34320564 |
T |
|
| Q |
118 |
tccaccatcttctct |
132 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34320563 |
tccaccatcttctct |
34320549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University