View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18647_low_2 (Length: 520)
Name: NF18647_low_2
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 149 - 507
Target Start/End: Complemental strand, 35222959 - 35222599
Alignment:
| Q |
149 |
gaagaaattgattatgaaaatctgtaattaggtagactgttcacgaaagaaatcagagt---gtaatttcgcgcggtaaataagccaaccaaacagatcc |
245 |
Q |
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| T |
35222959 |
gaagaaatagattatgaaaatctgtaattaggtagactgttcacaaaagaaatcagagtcatgtagtttcacgcggtaaataagccaaccaaacagatcc |
35222860 |
T |
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| Q |
246 |
ctgaaccaaatgatccatattggccaacctgccaatgcagcaacctggaaggaacttgtgcaaaagaaatcatcagttttaaagcaactcttgtgtccga |
345 |
Q |
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| T |
35222859 |
ctaaaccaaatga-ccatattggccaacctgccaatgcagcaaccaggaaggaacttgtgcaaaagaaatcattagttttaaagcaactcttgtgtccga |
35222761 |
T |
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| Q |
346 |
gttgctaatacctcgagcattccaatataggacaatcattgagcatttggagatgactcaccccttgagcgggttcaatatggcagcttcccaataattt |
445 |
Q |
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| T |
35222760 |
gttgctaatacctcgagcattccaatataggacaatcattgagcatttggagatgagtcaccccttgagcgggttcaatatggcggcttcccaagaattt |
35222661 |
T |
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| Q |
446 |
gttgttgccgcaatttttgtttttgcttcttggacaaaacaagagtaaatggatcttccttt |
507 |
Q |
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| T |
35222660 |
gttgttgccgcaatttctgtttttgcttcttggacaaaacaagagtaaatggatcttccttt |
35222599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 322 - 485
Target Start/End: Complemental strand, 11213329 - 11213169
Alignment:
| Q |
322 |
ttttaaagcaactcttgtgtccgagttgctaatacctcgagcattccaatataggacaatcattgagcatttggagatgactcaccccttgagcgggttc |
421 |
Q |
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| T |
11213329 |
ttttaaagaaacttttgtgtctgagttgccaataccttgagtattccaatataggacaatcattgggcacttggagatgaatcaccccttgaacgggttc |
11213230 |
T |
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| Q |
422 |
aatatggcagcttcccaataatttgttgttgccgcaatttttgtttttgcttcttggacaaaac |
485 |
Q |
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| T |
11213229 |
tataccgcagtttcccaaggacacgttgt---cgcaatttctgtttttgcttcttggataaaac |
11213169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 439
Target Start/End: Complemental strand, 19552947 - 19552830
Alignment:
| Q |
322 |
ttttaaagcaactcttgtgtccgagttgctaatacctcgagcattccaatataggacaatcattgagcatttggagatgactcaccccttgagcgggttc |
421 |
Q |
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| T |
19552947 |
ttttaacgcaagtcttatatcagagttgccaatacctcgaacattccagtaaaggacattcattgggcatatggagaggggtcaccccttgagcgggttc |
19552848 |
T |
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| Q |
422 |
aatatggcagcttcccaa |
439 |
Q |
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| T |
19552847 |
gatatggcggcttcccaa |
19552830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 440
Target Start/End: Complemental strand, 35090007 - 35089898
Alignment:
| Q |
331 |
aactcttgtgtccgagttgctaatacctcgagcattccaatataggacaatcattgagcatttggagatgactcaccccttgagcgggttcaatatggca |
430 |
Q |
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| T |
35090007 |
aactgttgtgtccaagttaccaaaacctcgggaattccaataaaaaacaattattgggcaataggagatgactcacccctgcagcgggttctgtacggcg |
35089908 |
T |
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| Q |
431 |
gcttcccaat |
440 |
Q |
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| T |
35089907 |
gcttcccaat |
35089898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 35223065 - 35223024
Alignment:
| Q |
40 |
aaaccttcatccaatgtcgtctaattcgaaaaagaatttatt |
81 |
Q |
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| T |
35223065 |
aaacctccatccaatatcgtcaaattcgaaaaagaatttatt |
35223024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 322 - 504
Target Start/End: Original strand, 34215408 - 34215590
Alignment:
| Q |
322 |
ttttaaagcaactcttgtgtccgagttgctaatacctcgagcattccaatataggacaatcattgagcatttggagatgactcaccccttgagcgggttc |
421 |
Q |
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||||||||||||||||||||| ||||| | | |||| |||||||||||||||||||| |||||| ||| |||||||||| |||||||||||| ||||| |
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| T |
34215408 |
ttttaaagcaactcttgtgtcagagtttccattaccgtgagcattccaatataggacagtcattgggcacttggagatgaagcaccccttgagcaggttc |
34215507 |
T |
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| Q |
422 |
aatatggcagcttcccaataatttgttgttgccgcaatttttgtttttgcttcttggacaaaacaagagtaaatggatcttcc |
504 |
Q |
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| T |
34215508 |
tatacggcggtttcccaaggacatgttgttgtctgaatttcagtttttgcttcttggacaaaaccggtgtgaatggatcttcc |
34215590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 504
Target Start/End: Complemental strand, 3569253 - 3569073
Alignment:
| Q |
326 |
aaagcaactcttgtgtccgagttgctaatacctcgagcattccaatataggacaatcattgagcatttggagatga--------ctcaccccttgagcgg |
417 |
Q |
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||||||||||||||| ||||||| |||| | ||| ||||||||||||||||||||| ||| |||||||||| ||||| || ||||||| |
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| T |
3569253 |
aaagcaactcttgtgcccgagtt------accttgtgcactccaatataggacaatcattgggcacttggagatgaagcactccctcactccctgagcgg |
3569160 |
T |
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| Q |
418 |
gttcaatatggcagcttcccaataatttgttgttgccgcaatttttgtttttgcttcttggacaaaacaagagtaaatggatcttcc |
504 |
Q |
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| T |
3569159 |
gttctatacggcggtttcctaaggacttcttgttgtcgtaatttctgtttttgcttcttggacaaaaccagcgtgaatagatcttcc |
3569073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 17368130 - 17368048
Alignment:
| Q |
403 |
tcaccccttgagcgggttcaatatggcagcttcccaataatttgttgttgccgcaatttttgtttttgcttcttggacaaaac |
485 |
Q |
| |
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|||||| ||||||||||| ||| ||| | ||||||| | |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
17368130 |
tcaccctttgagcgggttttatacggcggtttcccaaggacatgttgttgtcgcaatttctgtttttgcttcttggacaaaac |
17368048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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