View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18647_low_3 (Length: 448)
Name: NF18647_low_3
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 12063766 - 12064190
Alignment:
| Q |
18 |
tgaagatacttcaccactgaaactattaaaacctaaatcaattatctttgcattaggaagtgaccaaacaccttttggaacttttccaaacaaagaatta |
117 |
Q |
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| T |
12063766 |
tgaagatacttcaccactgaaattattaaaacctaaatcaattatctttgcatttggaagtgaccaaacacctttcggaatttttccagacaaagaatta |
12063865 |
T |
|
| Q |
118 |
ttactgattcttaatctttctagtgacttgcatgaagcgtaagactcggaaaaatttccagagaaattgttttgcaatgcaagcaaaagtgttaactttc |
217 |
Q |
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| T |
12063866 |
ttactgatccttaatctttctagtgacttgcatgaagcataagactcagaaaaatttccagagaaattgttttgcaatgcaagcaaaagtgttaactttc |
12063965 |
T |
|
| Q |
218 |
ttttctcacataagtactttgggaaaaaacctgaaaattgattctctgatatgtcgatacttttgagcggagaaaatcggccaaaattctccggaattgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12063966 |
ttttctcacataagtactttgggaaaaaacctgaaaattgattctctgatatgtcgatacttttgagcggagaaaatcggccaaaatcctccggaattgt |
12064065 |
T |
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| Q |
318 |
accgttgaaactgtttctgtaaaccgaaaaacctgtgagattttccattttaccaaatccagcaggaatttgaccagaaaagctgttatcatacagctga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12064066 |
accgttgaaactgtttctgtaaaccgaaaaacctgtgagattttccattttaccaaatccagcaggaatttgaccagaaaagctgttatcatacagctga |
12064165 |
T |
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| Q |
418 |
aaaacaaccaagttcttcatctcac |
442 |
Q |
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|||||||||||||||||||| |||| |
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| T |
12064166 |
aaaacaaccaagttcttcatttcac |
12064190 |
T |
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