View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18647_low_5 (Length: 436)
Name: NF18647_low_5
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 8210735 - 8210317
Alignment:
| Q |
19 |
agagtagtagtgataaatgtgatacacaaagatggaatggagattgtgaatggtgttagatgagtgctggnnnnnnn-ctt--tctaagggcttcaaaaa |
115 |
Q |
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| T |
8210735 |
agagtagtagtgataaatgtgatacacagagatggaatggagattctgaatggtgttagatgagtgctggttttttttcttcttctaagggcttcaaaaa |
8210636 |
T |
|
| Q |
116 |
ttacaacataactcattatcttcttcatttaaactcttctccatttgtataagaacgaaattagggatggtaaaataggtcgagtctatcgaaccaatcc |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8210635 |
ttacaacataactcactatcttcttcatttaaactcttctccatttgtataagaacgaaattagagatggtaaaataggtcgagtctatcgaaccaatca |
8210536 |
T |
|
| Q |
216 |
gtttaatatgttattttaaataaattgagttgatgttttaaactcaatctcttaagttggttcactctaactagatagaaaacgcatggtggaatcagta |
315 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||| |
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| T |
8210535 |
gtttaatctgttattttaaataaaccgagttgatgttttaaactcaatctcttaagttggttcactctaattagatagaaaaggcagggtggaaatagtg |
8210436 |
T |
|
| Q |
316 |
tggctggactagcatgcaagctagtataaaaaataatcatttttatatggnnnnnnnat-----agaaataatatgaatcacaacatcaaatcatttaat |
410 |
Q |
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||||||||| ||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
8210435 |
tggctggaccagcctgcaagctagtgtaaaaaataatcatttttatatatattttttttttttgagaaataatatgaatcacaacatcaaatcatttaat |
8210336 |
T |
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| Q |
411 |
cattagcccacctttgcta |
429 |
Q |
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||||||||||||||||||| |
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| T |
8210335 |
cattagcccacctttgcta |
8210317 |
T |
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