View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18647_low_6 (Length: 408)
Name: NF18647_low_6
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18647_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 88 - 392
Target Start/End: Original strand, 50444995 - 50445296
Alignment:
| Q |
88 |
ttcctgcttgctgctgattgagagaacgtgcctcagtgactttactttttggtgcattatgtttttcttgcaactgatcctattttcatgactaattttg |
187 |
Q |
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| T |
50444995 |
ttcctgcttactgctgattgaga-aacgtgcctcagtgactttactttttggtgcattatgtttttcttgcaactgatcctattttcatgaataattttg |
50445093 |
T |
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| Q |
188 |
gctttaatcaccaaagatatatcacaaagaggtttggcatgccaagttttgacaataaaatcttggcatttccgaaaattaagcttgatgggggagttca |
287 |
Q |
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| T |
50445094 |
gctttaatcaccaaagatatatcaca--gaggtttggcatgccaagttttgacaataaaatcttggcgtttccgaaaattgagcttgatgggggagttca |
50445191 |
T |
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| Q |
288 |
tgcatatacacaccacacttaatcatgattttagttcttcccttaccagttttgaagaagactgttttaattgcatgcccaacctaatgcattcttcatg |
387 |
Q |
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| T |
50445192 |
tgcatatacacaccacacttaatcatgattttagttcttcccttaccagttttgaagaagactgttttaattgcatgcccaacctaatgcgttcttcatg |
50445291 |
T |
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| Q |
388 |
caagt |
392 |
Q |
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| T |
50445292 |
caagt |
50445296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 104 - 366
Target Start/End: Original strand, 48395725 - 48395982
Alignment:
| Q |
104 |
attgagagaacgtgcctcagtgactttactttttggtgcattatgtttttcttgcaactgatcctattttcatgactaattttggcttt-aatcaccaaa |
202 |
Q |
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| T |
48395725 |
attgggagaacatgcctcaatggcttcactttctggagtattatgtttttcttgcaactgaa---attttcatgactaattttgggttttaatcaccaga |
48395821 |
T |
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| Q |
203 |
gatatatcacaaagaggtttggcatgccaagttttgacaataaaatcttggcatttccgaaaattaagcttgatgggggagttcatgcatatacacacca |
302 |
Q |
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| T |
48395822 |
gatatctcacaaagaggtttggcatgccaagttctgacaataaggtcttggcattttcggaaattgagcttgatgggggagttcatccacatgca---ca |
48395918 |
T |
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| Q |
303 |
cacttaatcatgattttagttcttcccttaccagttttgaagaagactgttttaattgcatgcc |
366 |
Q |
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| T |
48395919 |
cacttaatcttgatttcagttcttaccttaccagtttcgaagaagactgttttaattgcatgcc |
48395982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 50444946 - 50444996
Alignment:
| Q |
14 |
acatcatcaccccaacgacagctaactgcagttgggtagcaaactgcaatt |
64 |
Q |
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| T |
50444946 |
acatcataaccccaacgacagctaactgcagttgggtagtaaactgcaatt |
50444996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 42841674 - 42841720
Alignment:
| Q |
50 |
tagcaaactgcaattggctaagctgcacttaagtgtagttcctgctt |
96 |
Q |
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| T |
42841674 |
tagcaaactgcaattgactcagctgcacttaagtgcagttcctgctt |
42841720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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