View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18647_low_7 (Length: 405)

Name: NF18647_low_7
Description: NF18647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18647_low_7
NF18647_low_7
[»] chr3 (3 HSPs)
chr3 (305-389)||(42776116-42776200)
chr3 (19-119)||(42771349-42771446)
chr3 (148-221)||(42771541-42771614)
[»] chr6 (1 HSPs)
chr6 (243-343)||(760338-760438)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 305 - 389
Target Start/End: Original strand, 42776116 - 42776200
Alignment:
Q  305 aatagcaagaagtgccttttcagcaagtgttcctacaaaagtaaaacgctttcttcattaccttcttcttcaagcaatcattatc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42776116 aatagcaagaagtgccttttcagcaagtgttcctacaaaagtaaaacgctttcttcattaccttcttcttcaagcaatcattatc 42776200  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 42771349 - 42771446
Alignment:
Q  19 ctttcttcttaaacccaacatgtccatcaaaatgatgccatacagctgactacaagcagaaagatataatagtaagttttctctaatttgtacataaact 118  Q
    ||||||| ||||||| || ||||||||| ||| |||||||||| ||   |||||| ||||||||| |||||||||||||||| || ||||||||||||||    
T  42771349 ctttctttttaaaccaaatatgtccatcgaaacgatgccatactgc---ctacaaacagaaagatttaatagtaagttttctgtattttgtacataaact 42771445  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 42771541 - 42771614
Alignment:
Q  148 ttctatcggttaatatttcatccacaagaaaagtagtcaatcatccaaagcttaattatgaattaagatcataa 221  Q
    ||||||| ||||  |||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  42771541 ttctatcagttaggatttcatcaacaagaaaagtaattaatcatccaaagcttaattttgaattaagatcataa 42771614  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 343
Target Start/End: Original strand, 760338 - 760438
Alignment:
Q  243 tctgaatccatgacttctgagtggacacaaacagcatatagaaaaccatcttaaggaggcaaaatagcaagaagtgccttttcagcaagtgttcctacaa 342  Q
    |||||| |||||||||| ||||  |||| ||||| |||| ||||| || ||| ||||||||||| ||||||||| || ||||||||||||| ||||||||    
T  760338 tctgaagccatgacttcagagttaacacgaacagtatatggaaaaacaacttcaggaggcaaaacagcaagaagagctttttcagcaagtgctcctacaa 760437  T
Q  343 a 343  Q
    |    
T  760438 a 760438  T

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