View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18648_high_17 (Length: 236)
Name: NF18648_high_17
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18648_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3789851 - 3789632
Alignment:
| Q |
1 |
aaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcccatggcgcggcgtagataagatcttctttgatcattttgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789851 |
aaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcccatggcgcggcgtagataagatcttctttgatcattttgtgcaa |
3789752 |
T |
|
| Q |
101 |
gagatacaaactataaattttggagaatggtggctttgcaactctacttgtgatcttgaacctggtgtattttccatatcaccaaagttcctaccaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789751 |
gagatacaaactataaattttggagaatggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagttcctaccaattg |
3789652 |
T |
|
| Q |
201 |
gtccattgatggaaagtaac |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3789651 |
gtccattgatggaaagtaac |
3789632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 3800253 - 3800475
Alignment:
| Q |
1 |
aaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcccatggcgcggcgtagataagatcttctttgatcattttgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| |||||| || | |||||| |
|
|
| T |
3800253 |
aaaacaagaaattcaaatctccccggatatacctatgatggacacaacaaacatcccatggcgtggcgtagataagatcttatttgataatatggtgcaa |
3800352 |
T |
|
| Q |
101 |
gagatacaaactataaat---tttggagaatggtggctttgcaactctacttgtgatcttgaacctggtgtattttccatatcaccaaagttcctaccaa |
197 |
Q |
| |
|
||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3800353 |
gagatgcaaactttaaataattttggagaatggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagttcctaccaa |
3800452 |
T |
|
| Q |
198 |
ttggtccattgatggaaagtaac |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3800453 |
ttggtccattgatggaaagtaac |
3800475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 3780696 - 3780587
Alignment:
| Q |
98 |
caagagatacaaactataaattttggagaatggtggctttgcaactctacttgtgatcttgaacctggtgtattttccatatcaccaaagttcctaccaa |
197 |
Q |
| |
|
|||||||| ||| | || || |||||||| ||||||||||||||| | |||| | |||| || | || ||||||||||||||||||||| ||||||| |
|
|
| T |
3780696 |
caagagatgcaagccatgaagtttggagattggtggctttgcaacacaacttataatctcgagcatgcaacattttccatatcaccaaagtttctaccaa |
3780597 |
T |
|
| Q |
198 |
ttggtccatt |
207 |
Q |
| |
|
|||||||||| |
|
|
| T |
3780596 |
ttggtccatt |
3780587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 3755772 - 3755656
Alignment:
| Q |
99 |
aagagatacaaactataaattttggagaatggtggctttgcaactctacttgtgatcttgaacctggtgtattttccatatcaccaaagttcctaccaat |
198 |
Q |
| |
|
||||||| |||| ||| ||||| ||||||||||||||||| ||| ||| | |||||||| ||| | | ||||| |||||||||| || |||||||| |
|
|
| T |
3755772 |
aagagatgcaaaatatgaatttgggagaatggtggctttgtaacactagtatggatcttgaggctgaagcaatttccttatcaccaaaatttctaccaat |
3755673 |
T |
|
| Q |
199 |
tggtccattgatggaaa |
215 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
3755672 |
tggtccattaatggaaa |
3755656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 3768343 - 3768301
Alignment:
| Q |
173 |
tccatatcaccaaagttcctaccaattggtccattgatggaaa |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3768343 |
tccatctcaccaaagttcctaccaattggcccattgatggaaa |
3768301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University