View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18648_high_4 (Length: 482)

Name: NF18648_high_4
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18648_high_4
NF18648_high_4
[»] chr4 (5 HSPs)
chr4 (244-467)||(24412691-24412920)
chr4 (241-431)||(40414387-40414592)
chr4 (55-217)||(24412529-24412692)
chr4 (336-453)||(24412908-24413029)
chr4 (18-57)||(24408882-24408921)
[»] chr8 (4 HSPs)
chr8 (329-453)||(44912640-44912768)
chr8 (329-453)||(44913623-44913751)
chr8 (75-240)||(376049-376217)
chr8 (58-146)||(411824-411911)
[»] chr5 (5 HSPs)
chr5 (240-331)||(43385415-43385506)
chr5 (76-146)||(19281575-19281645)
chr5 (55-146)||(1495134-1495224)
chr5 (55-137)||(34063648-34063729)
chr5 (268-300)||(33824111-33824143)
[»] chr6 (1 HSPs)
chr6 (329-412)||(5437824-5437907)
[»] scaffold0007 (1 HSPs)
scaffold0007 (62-146)||(198913-198996)
[»] chr1 (4 HSPs)
chr1 (329-412)||(30642664-30642747)
chr1 (329-412)||(30647482-30647564)
chr1 (55-137)||(19403538-19403619)
chr1 (76-146)||(16801500-16801572)
[»] chr2 (1 HSPs)
chr2 (404-451)||(40497959-40498006)
[»] chr3 (4 HSPs)
chr3 (76-145)||(17766084-17766153)
chr3 (76-145)||(19067404-19067473)
chr3 (373-418)||(22931763-22931808)
chr3 (86-146)||(36802486-36802546)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 244 - 467
Target Start/End: Original strand, 24412691 - 24412920
Alignment:
Q  244 tggaacaaagtaactatctt--gtgttgattttgagagaatgaaaagagagaaagataagaagtagagaattattgttgtaaacttatgaaaattgatta 341  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  24412691 tggaacaaagtaactatattttgtgttgattttgagagaatgaaaagagagaaagagaagaagtagagaattattgttgtaaactgatgaaaagtgatta 24412790  T
Q  342 caacatgtcttatataggaggcttatttacattgcttgcttagtaaactatctaaacaaacataacaaacttagctagattacctaacta----gtaaca 437  Q
    |||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||     ||||||    
T  24412791 caacgtgccttatataagaggcttattcacattgcttgcttagtaaactatctaaacaaacataacaaacttagttagattacataacttacttgtaaca 24412890  T
Q  438 aacttttataccccaaatcattacaacatg 467  Q
    |||||||||||||||| | ||||| |||||    
T  24412891 aacttttataccccaagtgattactacatg 24412920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 241 - 431
Target Start/End: Original strand, 40414387 - 40414592
Alignment:
Q  241 tgttggaacaaagtaactatcttgtgtt-gattttgagagaatgaaaagagagaaagataagaagtagagaattattgttgtaaactta----------- 328  Q
    |||||||| |||||||  || ||||||| ||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||               
T  40414387 tgttggaaaaaagtaaaaattttgtgtttgattttgagagaatgaaaagagagaaagagaagaagtagagaatt---gttgtaaacttacgagttttcat 40414483  T
Q  329 ------tgaaaattgattacaacatgtcttatataggaggcttatttacattgcttgcttagtaaactatctaaacaaacataacaaacttagctagatt 422  Q
          |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  40414484 tattagtgaaaagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatctaaacaaacataacaaacttagttagatt 40414583  T
Q  423 acctaacta 431  Q
    | |||||||    
T  40414584 aactaacta 40414592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 24412529 - 24412692
Alignment:
Q  55 tcgctaaactcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa-aaattat 153  Q
    ||||||||| |||||||||  ||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||| ||||||||| | |||| |||||      
T  24412529 tcgctaaacccaaagaactccaaaaaggacttcaattcagtccttaactattttttgattatattgtttgtattaccaaaaatcattataaataaattgg 24412628  T
Q  154 cactagaaggaggagattttccagttttagcacagatctaatgctctgtgtttgaaaagtggtg 217  Q
    | |||||| || |||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  24412629 cgctagaaagatgagattttccagttttagcgtagatctaatgctttgtgtttgaaaagtggtg 24412692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 336 - 453
Target Start/End: Original strand, 24412908 - 24413029
Alignment:
Q  336 tgattacaacatgtcttatataggaggcttatttacattgcttgcttagtaaactatctaaacaaacataacaaacttagctagattacctaacta---- 431  Q
    ||||||| ||||| |||||||| |||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||        
T  24412908 tgattactacatgccttatataagaggcttattcacattgcttgcttagcaaactatctaaccaaacgtaacaaacttagctagattacctaactaactt 24413007  T
Q  432 gtaacaaacttttataccccaa 453  Q
    ||||||||||||||| ||||||    
T  24413008 gtaacaaacttttatgccccaa 24413029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 24408882 - 24408921
Alignment:
Q  18 atgaaccgaatcaatttaaataatcgagtccaacacttcg 57  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  24408882 atgaactgaatcaatttaaataatcaagtccaacacttcg 24408921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 329 - 453
Target Start/End: Original strand, 44912640 - 44912768
Alignment:
Q  329 tgaaaattgattacaacatgtcttatataggaggcttatttacattgcttgcttagtaaactatctaaacaaacataacaaacttagctagattacctaa 428  Q
    |||||| ||| |||| ||||||||||||| || |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44912640 tgaaaagtgactacatcatgtcttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaacttagctagattacctaa 44912739  T
Q  429 cta----gtaacaaacttttataccccaa 453  Q
    |||    ||||||||||||||||||||||    
T  44912740 ctaacttgtaacaaacttttataccccaa 44912768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 329 - 453
Target Start/End: Original strand, 44913623 - 44913751
Alignment:
Q  329 tgaaaattgattacaacatgtcttatataggaggcttatttacattgcttgcttagtaaactatctaaacaaacataacaaacttagctagattacctaa 428  Q
    |||||| |||||||| |||| ||||||||  | ||||||| |||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  44913623 tgaaaagtgattacatcatgccttatataaaaagcttattcacattgcttgcttagtaagctatctaaacaaacataacaaatatagctagattacctaa 44913722  T
Q  429 cta----gtaacaaacttttataccccaa 453  Q
    |||    ||||||||||| ||||||||||    
T  44913723 ctaacttgtaacaaacttctataccccaa 44913751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 376049 - 376217
Alignment:
Q  75 taaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa-aaattatcactagaagga-ggagattt 172  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||||||||||   ||||||| |||||||| |||||  |  |||||||| || |||||    
T  376049 taaaaagggctttaattcagtccttaactg-ttttggataatattgtttgtatcgccaaaaattagtgtaaacaaattggcgttagaaggagggggattt 376147  T
Q  173 tccagttttagcacagatctaatgc--tctgtgtttgaaaagtggtgatttaaactctatggctaacagt 240  Q
    |||||||||||| |  |||||||||  | |||||||||||| ||||||||| | || ||||| |||||||    
T  376148 tccagttttagcccgaatctaatgctttatgtgtttgaaaaatggtgatttgatctttatggttaacagt 376217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 411824 - 411911
Alignment:
Q  58 ctaaactcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 146  Q
    |||||| ||||||||  |||||| |||||||||||| ||||||  || ||| |||| |||| |||| |||||| |||||||| ||||||    
T  411824 ctaaacccaaagaaccctaaaaaagactttaattcaatccttatatg-tttcggataatatcgtttttattataaaaaatcaatgtaaa 411911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 240 - 331
Target Start/End: Original strand, 43385415 - 43385506
Alignment:
Q  240 ttgttggaacaaagtaactatcttgtgttgattttgagagaatgaaaagagagaaagataagaagtagagaattattgttgtaaacttatga 331  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43385415 ttgttggaacaaagtaactattttatgttgattttgtgagaatgaaaagagagaaagagaagaagtagagaattattgttgtaaacttatga 43385506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 19281645 - 19281575
Alignment:
Q  76 aaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 146  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||    
T  19281645 aaaaaggactttaattcagtccttaactgtttttggataatattgtttgtattaccaataaccagtgtaaa 19281575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 1495134 - 1495224
Alignment:
Q  55 tcgctaaactcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 146  Q
    |||||||||||||||||| | ||||||||||||||||| || |||||| | |||||||| ||||  |||||||| |||||||||||||||||    
T  1495134 tcgctaaactcaaagaacctcaaaaaggactttaattcggttcttaacag-ttttggataatatcatttgtattgtcaaaaatcagtgtaaa 1495224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 34063648 - 34063729
Alignment:
Q  55 tcgctaaactcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaat 137  Q
    ||||||||| ||||||||   ||||| ||||||||||||| ||||||||| |||||||| |||| |||||||||| |||||||    
T  34063648 tcgctaaacccaaagaaccccaaaaatgactttaattcagcccttaactg-ttttggataatatcgtttgtattaccaaaaat 34063729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 33824143 - 33824111
Alignment:
Q  268 tgattttgagagaatgaaaagagagaaagataa 300  Q
    |||||||||||||| ||||||||||||||||||    
T  33824143 tgattttgagagaaagaaaagagagaaagataa 33824111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 5437907 - 5437824
Alignment:
Q  329 tgaaaattgattacaacatgtcttatataggaggcttatttacattgcttgcttagtaaactatctaaacaaacataacaaact 412  Q
    |||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  5437907 tgaaaaatgattacaacatgccttatataagaggcttattcacattgcttgcttagtaagctatctaaacaaacataacaaact 5437824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 198913 - 198996
Alignment:
Q  62 actcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 146  Q
    |||||||||||   ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  198913 actcaaagaaccccaaaaaggactttaattcagtccttaactg-ttttggataatattgtttgtattaccaaaaatcagtgtaaa 198996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 30642747 - 30642664
Alignment:
Q  329 tgaaaattgattacaacatgtcttatataggaggcttatttacattgcttgcttagtaaactatctaaacaaacataacaaact 412  Q
    |||||| |||||||| |||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  30642747 tgaaaagtgattacagcatgccttatataagaggcttatttaccttgcttgcatagtaaactatctaaacaaacataaccaact 30642664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 30647564 - 30647482
Alignment:
Q  329 tgaaaattgattacaacatgtcttatataggaggcttatttacattgcttgcttagtaaactatctaaacaaacataacaaact 412  Q
    |||||| ||||||||||||| |||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||    
T  30647564 tgaaaagtgattacaacatgccttatataagaggcttatttaca-tgcttggttagtaagctatctaaacaaacataaccaact 30647482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 19403619 - 19403538
Alignment:
Q  55 tcgctaaactcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaat 137  Q
    ||||||||| ||||||||   ||||| ||||||||||||| ||||||||| |||||||| |||| |||||||||| |||||||    
T  19403619 tcgctaaacccaaagaaccccaaaaatgactttaattcagcccttaactg-ttttggataatatcgtttgtattaccaaaaat 19403538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 16801572 - 16801500
Alignment:
Q  76 aaaaaggactttaattcagtccttaac--tgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 146  Q
    |||||||||||||||||||||||||||  | | || |||| |||||||||||||||  |||||||||||||||    
T  16801572 aaaaaggactttaattcagtccttaactatatattcggataatattgtttgtattactaaaaatcagtgtaaa 16801500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 404 - 451
Target Start/End: Complemental strand, 40498006 - 40497959
Alignment:
Q  404 taacaaacttagctagattacctaactagtaacaaacttttatacccc 451  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40498006 taacaaacttagctagatttcctaactagtaacaaacttttatacccc 40497959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 17766153 - 17766084
Alignment:
Q  76 aaaaaggactttaattcagtccttaa-ctgtttttggatgatattgtttgtattatcaaaaatcagtgtaa 145  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||| ||||||    
T  17766153 aaaaaggactttaattcagtccttaaactgtttt-ggataatattgtttgtattaccaaaaatccgtgtaa 17766084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 19067473 - 19067404
Alignment:
Q  76 aaaaaggactttaattcagtccttaa-ctgtttttggatgatattgtttgtattatcaaaaatcagtgtaa 145  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||| ||||||    
T  19067473 aaaaaggactttaattcagtccttaaactgtttt-ggataatattgtttgtattaccaaaaatccgtgtaa 19067404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 22931763 - 22931808
Alignment:
Q  373 ttgcttgcttagtaaactatctaaacaaacataacaaacttagcta 418  Q
    ||||||||||||||| | |||||||||||| |||||||||||||||    
T  22931763 ttgcttgcttagtaagcaatctaaacaaacttaacaaacttagcta 22931808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 36802486 - 36802546
Alignment:
Q  86 ttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 146  Q
    |||||||| || ||||||||||||  || ||||||||||||||| ||||||| ||||||||    
T  36802486 ttaattcaatcgttaactgtttttaaataatattgtttgtattaccaaaaattagtgtaaa 36802546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University