View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18648_high_5 (Length: 412)
Name: NF18648_high_5
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18648_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 9650919 - 9650541
Alignment:
| Q |
19 |
caagagccttgagatgagagctcatgtcccagatctacaagttcatcactcaaagtatcagatttatacaaaaatatacgactcggtaagaatgaataga |
118 |
Q |
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| T |
9650919 |
caagagccttgagatgagagctcatgtcccagatctacaagttcatcactcaaagtatcagatttatacaaaaatatacgactcggtaagaatgaataga |
9650820 |
T |
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| Q |
119 |
gtttaacttctgtgattgaaagagttgatgcagaaaaagataaattgcaacccttaaccttagttgctgctaaaatttaagaactttcagaaatttcaat |
218 |
Q |
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| T |
9650819 |
gtttaacttctgtgattgaaagagttgatgcagaaaaagataaattgcaaccctgaaccttagctgctgctaaaatttaagaactttcagaaatttcaat |
9650720 |
T |
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| Q |
219 |
atgttgcaattgcaatacttaggattgagtaacctcatttttatcatagagcaagaattatatctggacaatattaatcatatcaaatcgaacttgtaac |
318 |
Q |
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| T |
9650719 |
atgttgcaattgcaaaacttaggattgagtaacctcatttttatcatagagcaagaattatatctggacaatattaatcatatcaaatcgaacttgtaac |
9650620 |
T |
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| Q |
319 |
tagctctg-annnnnnngtaagtattatcttccaacatattatagaaccgcataagtattatcttaccagtgtatgtag |
396 |
Q |
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| T |
9650619 |
tagctctgaatttttttgtaagtattatcttccaacatgttatagaaccgcataagtattatcttaccagtgtatgtag |
9650541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 34736658 - 34736804
Alignment:
| Q |
21 |
agagccttgagatgagagctcatgtcccagatctacaagttcatcactcaaagtatcagatttatacaaaaatatacgactcggtaagaatgaa-tagag |
119 |
Q |
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| T |
34736658 |
agagcattaagatgagagctcatgtcccagatctaaaaatttattacacaga--atcagatttgaacaaaaatatacaactcggtaagaatgaagtagag |
34736755 |
T |
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| Q |
120 |
tttaacttctgtgattgaaagagttgatgcagaaaaagataaattgcaa |
168 |
Q |
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| T |
34736756 |
tttaacttctttgtttgaaagagatggtgcagagaaatataaattgcaa |
34736804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 34736844 - 34736882
Alignment:
| Q |
217 |
atatgttgcaattgcaatacttaggattgagtaacctca |
255 |
Q |
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| T |
34736844 |
atatgttgcaattgcaatacttaggactgagtaacctca |
34736882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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