View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18648_high_9 (Length: 357)
Name: NF18648_high_9
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18648_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 341
Target Start/End: Complemental strand, 51806334 - 51806005
Alignment:
| Q |
12 |
catcatcaaccattcttcttctttggactaatagttattatttccatgaccaacatgtcacatgttatcagcacaaaccaatctgagnnnnnnnctctaa |
111 |
Q |
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| T |
51806334 |
catcatcaaccattcttcttctttggactaatagttattatttccatgaccaacatgtcacatgttatcagcacaaaccaatctgagtttttttctctaa |
51806235 |
T |
|
| Q |
112 |
tgaaagagtctctctcaggaaactacccttttgattggggtgtaagcaaagtggataaaccaatctgcgacttcaccggaatcacctgtgacaacaaagg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51806234 |
tgaaagagtctctctcaggaaactacccttttgattggggtgtaagcaaagtggataaaccaatctgcgacttcaccggaatcacctgtgacaacaaagg |
51806135 |
T |
|
| Q |
212 |
agacatcataagtcttgatttttcaggttggtcatcactttccggaaacttcccatcaaatatttgctcttaccttccaaatttacgtgtcctaaacctc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51806134 |
agacatcataagtcttgatttttcaggttggtcatcactttccggaaacttcccgtcaaatatttgctcttaccttccaaatttacgtgtcctaaacctc |
51806035 |
T |
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| Q |
312 |
ggtaatacaaaattcaagttcccaacaaac |
341 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
51806034 |
ggtaatacaaaattcaagttcccaacaaac |
51806005 |
T |
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