View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18648_low_1 (Length: 1756)
Name: NF18648_low_1
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18648_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 11 - 628
Target Start/End: Original strand, 55950586 - 55951203
Alignment:
| Q |
11 |
acatcatcaggttcacatccaaacaacggcatcttttcaaaccactccacagctttttcaggcaaataacaagacctagcacaactaattatagtcgaaa |
110 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55950586 |
acatcatccggttcacatccaaacaacggcatcttttcaaaccactccacagctttatcaggcaaataacaagacctagcacaactaattatagtcgaaa |
55950685 |
T |
|
| Q |
111 |
aagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgcaccatccaaatccttacactttctaaacaccttaagggtaac |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55950686 |
aagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgcaccatccaaatccttacactttctaaacaccttaagggtaac |
55950785 |
T |
|
| Q |
211 |
attgtaaagaattacctccctagtgggtatgctcttcctttgaacatactgaagaacaaaaggtacaacaacagaattctccatattattgatgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55950786 |
attgtaaagaattacctccctagtgggtatgctcttcctttgaacatactgaagaacaaaaggtacaacaacagaattctccatattattgatgataatt |
55950885 |
T |
|
| Q |
311 |
acggcgtcttgttctaaaaccttatcacccaaacacttcaaaatttgagaaacatcatgttcagtgggttcacatgaatccaaagcgtttgaaagcttaa |
410 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55950886 |
acagcgtcttgttctataaccttatcacccaaacacttcaaaatttgagaaacatcatgttcagtgggttcacatgaatccaaagcgtttgaaagcttaa |
55950985 |
T |
|
| Q |
411 |
caagagaactgtaccttgcgtcgtaagatttctttccaagttgtttagctctgggggatttgggattgacccaaatgtaactgcttttggaggaagtaga |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55950986 |
caagagaactgtaccttgcgtcgtaagatttctttccaagttgtttagctctgggggatttgggattgacccaaatgtaactgcttttggaggaagtaga |
55951085 |
T |
|
| Q |
511 |
attggcaattgggttatcaaattttgcgtccttttgggaattagcgtcttgtggttgttgttgtggaatggattcttgaagggaaatgtggagaagggtt |
610 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55951086 |
attgccaattgggttatcaaatttagcgtccttttgggaattagcgtcttgtggttgttgttgtggaatggattcttgaagggaaatgtggagaagggtt |
55951185 |
T |
|
| Q |
611 |
ttggagtggggggtgagt |
628 |
Q |
| |
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|||||||||||||||||| |
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| T |
55951186 |
ttggagtggggggtgagt |
55951203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1194 - 1752
Target Start/End: Complemental strand, 52511795 - 52511230
Alignment:
| Q |
1194 |
atgttaatcttctgttgctgctgctg---ttatattcactgtactacatccttttcagtccttcttgtttgtgaccacaactgaattgaggcttgctaat |
1290 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52511795 |
atgttaatcttctgttgctgctgctgctgttatattcactgtactacatccttttcagtccttcttgtttgtgaccacaactgaattgaggcttgctaat |
52511696 |
T |
|
| Q |
1291 |
gcttatttctggtccaccagtgactgcaatggtaatcggctcctagcttagaatatatttggtctggaggtattccagaaccctaaattttgcttggtta |
1390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
52511695 |
gcttatttctggtccaccagtgactgcaatggtaatcggctcctagcttagaatatatttggtctggaggcattccagaaccctaaattttgctcggtta |
52511596 |
T |
|
| Q |
1391 |
ctagttagcacctattgaatttcaatattttgtatgaaagaaataccatttttcaatactaagattgcccatattcacgattaccaaaatgacttccaaa |
1490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52511595 |
ctagttagcacctattgaatttcaatattttgtatgaaagaaaaaccatttttcaatactaagattgccaatattcacgattaccaaaatgacttccaaa |
52511496 |
T |
|
| Q |
1491 |
atgtcagg----tatagtgtaaacattcaacagacacttctagcaagtattgctatgtatggtcctatatagatagttaccaagtaaatacgtacatttt |
1586 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52511495 |
atgtcaggtatatatagtgtaaacattcaacaaacacttctaccaagtattgctatgtaaggtcctatatagatagttaccaagtaaatacgtacatttt |
52511396 |
T |
|
| Q |
1587 |
tattcaactcatgtgtatctagggtattatatcctccaagatgtgtcaagcagattcaagctctttatattggtcttaaaaattgaacagcggctaaaaa |
1686 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52511395 |
tattcaactcatgtgtatctagggtattatatcctccaagatgtgtcaagcagattcaagctctttatattgctcttaaaaattgaacagcggctaaaaa |
52511296 |
T |
|
| Q |
1687 |
atttatgccttatttgttcacacctgtgttacttggacagaaattgagataacatattcttcgaca |
1752 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
52511295 |
atttatgccttatttgttcacacctgtgttacttggacagaaattgagataacatttttttcgaca |
52511230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 654 - 1184
Target Start/End: Complemental strand, 52512387 - 52511836
Alignment:
| Q |
654 |
ttgtttcgaggcgtcaatgtcttaaatgtttgtgttcaactccatttttaattaatgcaaccaactcagcagcaaccgctcttgataagcctcctggttg |
753 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512387 |
ttgtttcgaggcgtcaatgtcttaaatgtttgtgttcaactccatttttaattaatgcaaccaactcagcagcaaccgctcttgataagcctcctggttg |
52512288 |
T |
|
| Q |
754 |
cagaaattgtggtggaagtggtaacatcatttgtgagtcctcttctcttttctcctcattctttttta-----------ataataatattcttcttcctt |
842 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| | ||||||||| |
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|
| T |
52512287 |
cagaaattgtggtggaagtggtaacatcatttgtgagtcctcttctcttttctcttcattctttgttataataataataataataataatattcttcctt |
52512188 |
T |
|
| Q |
843 |
attataatactacttttcattt----------aggtgatatgtgtggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatg |
932 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52512187 |
attataatactacttttcatttcatttcatttaggtgatatgtgtggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatg |
52512088 |
T |
|
| Q |
933 |
aatttactgaatgtcctaattgttatggtatcattcattcttctactttgctcatttcnnnnnnncttagtaaacgactaaattgacagattttccgtag |
1032 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
52512087 |
aatttactgaatgtcctaattgttatggtatcattcattcttctaatttgctcatttctttttttcttagtaaacgactaaattgactgattttccgtag |
52511988 |
T |
|
| Q |
1033 |
gtcgaggaaagcttgtctgccctgtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataagat |
1132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52511987 |
gtcgaggaaagcttgtctgccctgtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataagat |
52511888 |
T |
|
| Q |
1133 |
gtataatggacgcctacttccaaattcttagaaggtatgtatactactcatg |
1184 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52511887 |
gtataatggacgcctacttcccaattcttagaaggtatgtatactactcatg |
52511836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 9674201 - 9674298
Alignment:
| Q |
89 |
gcacaactaattatagtcgaaaaagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgcaccatccaaatccttaca |
186 |
Q |
| |
|
|||||| |||| ||||| | |||||||| |||||| ||||| || ||||| |||||||||||| |||| ||||||| ||||||||| ||||| ||||| |
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|
| T |
9674201 |
gcacaattaatcatagtagtaaaagtaatattatccggcttaacccctctttgaagcatttcatcaaaaaccttctgtgcaccatcaaaatcattaca |
9674298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 9649872 - 9649953
Alignment:
| Q |
88 |
agcacaactaattatagtcgaaaaagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgca |
169 |
Q |
| |
|
||||||| |||| || |||||||| |||||| || ||||||||| ||||| |||||||||||| |||||| ||||||||| |
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|
| T |
9649872 |
agcacaagtaatcatcgtcgaaaacgtaacaacattaggcttcacccctctttgaagcatttcatcaaacagtttctctgca |
9649953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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