View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18648_low_14 (Length: 331)

Name: NF18648_low_14
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18648_low_14
NF18648_low_14
[»] chr5 (19 HSPs)
chr5 (18-322)||(36894905-36895209)
chr5 (18-112)||(30488774-30488868)
chr5 (18-111)||(38734289-38734376)
chr5 (113-198)||(18033418-18033503)
chr5 (124-195)||(32198855-32198926)
chr5 (113-195)||(71254-71336)
chr5 (116-196)||(3851357-3851437)
chr5 (116-195)||(15712187-15712266)
chr5 (135-186)||(32398088-32398139)
chr5 (113-183)||(694213-694283)
chr5 (138-196)||(15549413-15549471)
chr5 (142-196)||(33652658-33652712)
chr5 (124-185)||(694280-694341)
chr5 (116-196)||(23914835-23914915)
chr5 (114-196)||(25773307-25773386)
chr5 (116-196)||(26300105-26300185)
chr5 (113-197)||(31785938-31786022)
chr5 (124-196)||(31963513-31963585)
chr5 (113-177)||(43482835-43482899)
[»] chr3 (19 HSPs)
chr3 (18-112)||(4760368-4760462)
chr3 (113-177)||(9492689-9492753)
chr3 (135-203)||(24694313-24694381)
chr3 (135-195)||(43177083-43177143)
chr3 (113-191)||(42929005-42929083)
chr3 (126-191)||(8150008-8150073)
chr3 (130-176)||(22153073-22153119)
chr3 (116-196)||(10872738-10872818)
chr3 (124-196)||(40639869-40639941)
chr3 (113-157)||(53638424-53638468)
chr3 (128-195)||(27224575-27224642)
chr3 (126-196)||(37807504-37807574)
chr3 (125-183)||(42681187-42681245)
chr3 (126-183)||(20625246-20625303)
chr3 (116-197)||(51617397-51617478)
chr3 (121-177)||(20619004-20619060)
chr3 (124-196)||(26244454-26244526)
chr3 (116-192)||(29720142-29720218)
chr3 (125-177)||(50603538-50603590)
[»] chr2 (27 HSPs)
chr2 (18-112)||(43848489-43848583)
chr2 (113-195)||(1961304-1961386)
chr2 (113-197)||(41805267-41805351)
chr2 (113-195)||(15119840-15119922)
chr2 (124-195)||(29819765-29819836)
chr2 (127-196)||(1980979-1981048)
chr2 (112-177)||(32630419-32630484)
chr2 (116-196)||(5574176-5574256)
chr2 (113-197)||(10602357-10602441)
chr2 (116-196)||(26003501-26003581)
chr2 (126-198)||(32143398-32143470)
chr2 (113-200)||(26234087-26234174)
chr2 (114-177)||(36547354-36547417)
chr2 (121-204)||(38465860-38465943)
chr2 (124-183)||(44868519-44868578)
chr2 (124-190)||(7079370-7079436)
chr2 (121-195)||(15900290-15900364)
chr2 (125-203)||(38465776-38465854)
chr2 (129-186)||(4605576-4605633)
chr2 (135-188)||(11342055-11342108)
chr2 (121-198)||(38181831-38181908)
chr2 (113-169)||(10041563-10041619)
chr2 (124-196)||(21183401-21183473)
chr2 (113-193)||(27497330-27497409)
chr2 (136-196)||(32143492-32143552)
chr2 (113-197)||(32308322-32308406)
chr2 (121-177)||(40187314-40187370)
[»] chr7 (24 HSPs)
chr7 (121-195)||(28321634-28321708)
chr7 (112-195)||(23797410-23797493)
chr7 (124-197)||(6455623-6455696)
chr7 (116-197)||(29498776-29498857)
chr7 (113-197)||(30138851-30138935)
chr7 (116-188)||(39960304-39960376)
chr7 (113-201)||(41803711-41803799)
chr7 (112-176)||(46495430-46495494)
chr7 (113-196)||(2456330-2456413)
chr7 (113-196)||(6455543-6455626)
chr7 (126-201)||(28228977-28229052)
chr7 (113-188)||(31813413-31813488)
chr7 (128-183)||(32558533-32558588)
chr7 (121-195)||(9555255-9555329)
chr7 (116-186)||(26477227-26477297)
chr7 (116-186)||(26553667-26553737)
chr7 (113-162)||(26385688-26385737)
chr7 (124-177)||(32490602-32490655)
chr7 (130-203)||(43103059-43103132)
chr7 (138-195)||(45002071-45002128)
chr7 (124-196)||(6803447-6803519)
chr7 (128-196)||(7295134-7295202)
chr7 (124-196)||(25245217-25245289)
chr7 (112-144)||(31319562-31319594)
[»] scaffold0036 (1 HSPs)
scaffold0036 (114-195)||(89662-89744)
[»] chr6 (10 HSPs)
chr6 (113-183)||(20704086-20704156)
chr6 (116-177)||(14218263-14218324)
chr6 (116-201)||(11746294-11746379)
chr6 (112-188)||(12383651-12383727)
chr6 (112-196)||(13506828-13506912)
chr6 (127-198)||(30397717-30397788)
chr6 (112-195)||(32254883-32254966)
chr6 (113-195)||(11637165-11637247)
chr6 (113-195)||(28555010-28555092)
chr6 (135-195)||(18097055-18097115)
[»] chr8 (21 HSPs)
chr8 (112-190)||(45045439-45045517)
chr8 (112-177)||(13080150-13080215)
chr8 (135-196)||(15232354-15232415)
chr8 (121-195)||(10934598-10934672)
chr8 (113-195)||(13964414-13964496)
chr8 (113-169)||(3225801-3225857)
chr8 (135-195)||(27518400-27518460)
chr8 (114-161)||(467980-468027)
chr8 (113-196)||(13496498-13496581)
chr8 (113-196)||(31810328-31810411)
chr8 (112-195)||(33070227-33070310)
chr8 (113-188)||(36916585-36916660)
chr8 (135-197)||(3444615-3444677)
chr8 (135-177)||(25267988-25268030)
chr8 (128-198)||(40098752-40098822)
chr8 (141-183)||(44525103-44525145)
chr8 (124-193)||(28882738-28882807)
chr8 (113-177)||(2805876-2805940)
chr8 (116-148)||(13211281-13211313)
chr8 (121-169)||(20546709-20546757)
chr8 (116-196)||(40098826-40098906)
[»] chr1 (26 HSPs)
chr1 (116-162)||(22558891-22558937)
chr1 (121-193)||(17342344-17342416)
chr1 (116-196)||(31008253-31008333)
chr1 (135-183)||(33289060-33289108)
chr1 (113-193)||(34953959-34954039)
chr1 (124-195)||(45115165-45115236)
chr1 (113-191)||(10832057-10832135)
chr1 (112-189)||(11324495-11324572)
chr1 (112-189)||(11482516-11482593)
chr1 (121-198)||(17490480-17490557)
chr1 (113-177)||(3549792-3549856)
chr1 (131-186)||(18607166-18607221)
chr1 (113-196)||(45115233-45115316)
chr1 (121-179)||(183893-183951)
chr1 (113-183)||(14365428-14365498)
chr1 (116-196)||(40262534-40262612)
chr1 (121-177)||(1597202-1597258)
chr1 (124-168)||(5753205-5753249)
chr1 (129-177)||(22558942-22558990)
chr1 (126-158)||(26423456-26423488)
chr1 (116-196)||(33604057-33604137)
chr1 (113-177)||(41007740-41007804)
chr1 (131-183)||(43728193-43728245)
chr1 (125-197)||(46412763-46412835)
chr1 (128-168)||(47599929-47599969)
chr1 (116-196)||(48022589-48022669)
[»] chr4 (19 HSPs)
chr4 (112-196)||(36072564-36072648)
chr4 (135-186)||(51829176-51829228)
chr4 (114-196)||(14450951-14451033)
chr4 (116-169)||(45186471-45186524)
chr4 (124-196)||(19934632-19934704)
chr4 (124-196)||(54164807-54164879)
chr4 (116-195)||(5418581-5418660)
chr4 (137-188)||(16203427-16203478)
chr4 (125-196)||(19934713-19934784)
chr4 (116-195)||(36786145-36786224)
chr4 (131-189)||(12070074-12070132)
chr4 (114-195)||(8826929-8827010)
chr4 (135-196)||(16468289-16468350)
chr4 (126-195)||(40814745-40814814)
chr4 (136-196)||(483973-484033)
chr4 (128-168)||(36712073-36712113)
chr4 (116-196)||(38298084-38298164)
chr4 (121-189)||(48860531-48860599)
chr4 (125-197)||(54164888-54164960)
[»] scaffold0635 (1 HSPs)
scaffold0635 (113-169)||(5451-5507)
[»] scaffold0047 (1 HSPs)
scaffold0047 (127-195)||(61239-61307)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 36895209 - 36894905
Alignment:
Q  18 aatggaaatcatggccatgtgtttttgaaaatgaatggcagatatcaattcgtggttttcgtggatagctgattcataggagcaagcattttccagtcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36895209 aatggaaatcatggccatgtgtttttgaaaatgaatggcagatatcaattcgtggttttcgtggatagctgattcataggagcaagcattttccagtcta 36895110  T
Q  118 tagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtattaattttacttactagccaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36895109 tagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataatagtgatcggagggtgtattaattttacttactagccaag 36895010  T
Q  218 agatactacattttgaagtggatacttgtttgcatttattagaaaggaatcttttcattatttcaaaaaatacataatctataatctgggacaaacattt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36895009 agatactacattttgaagtggatacttgtttgcatttattagaaaggaatcttttcattatttcaaaaaatacataatctataatctgggacaaacattt 36894910  T
Q  318 catct 322  Q
    |||||    
T  36894909 catct 36894905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 30488774 - 30488868
Alignment:
Q  18 aatggaaatcatggccatgtgtttttgaaaatgaatggcagatatcaattcgtggttttcgtggatagctgattcataggagcaagcattttcca 112  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | ||||| ||||| |||||||||||||    
T  30488774 aatggaaatcatggccatgtgtttatgaaaatggatggcggatatcaagtcgtggttttcgtggataacagattcgtaggaacaagcattttcca 30488868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 38734289 - 38734376
Alignment:
Q  18 aatggaaatcatggcc-atgtgtttttgaaaatgaatggcagatatcaattcgtggttttcgtggatagctgattcataggagcaagcattttcc 111  Q
    |||||||||||| ||| ||||||||||||||||||||       |||| ||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  38734289 aatggaaatcatagcccatgtgtttttgaaaatgaat-------atcagttcgtggttttcgtggatagctgattcgtaggaacaaacattttcc 38734376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 18033418 - 18033503
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatta 198  Q
    ||||||| |||||||||  || |||||||| | ||||||| ||||||||||| ||||| |||||| ||||| |||||| |||||||    
T  18033418 gtctataataaagaccatgtacatcattaaatgaataaatctaaaatgtagatttttgcttataatagtgaccggaggatgtatta 18033503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 32198926 - 32198855
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||||||||| || ||| ||| |||||| |||||| ||||| |||||||||||  |||||||||||||||||    
T  32198926 agaccacatacattatttattgaataaacttaaaaggtagatttttgtttatattagtgatcggagggtgta 32198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 71336 - 71254
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| |||||| || ||| |||||||||| ||| ||| |||||| |||| ||||| |||||| ||||| |||||||||||    
T  71336 gtctataataaagatcatatacatcattaattgaatgaatctaaaatatagatttttgcttataatagtgaccggagggtgta 71254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 3851437 - 3851357
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||||||| |||||||||| |||  || ||||| || || ||||| |||||  ||||||||||||||||||    
T  3851437 tataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgatcggagggtgtat 3851357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 15712187 - 15712266
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||| ||||||||||||| |||||||||| |||  |||||||| || || ||||| |||||  | |||||||||||||||    
T  15712187 tataataaagaccacatacatcattaattgaatgtatttaaaaagttgatttttgcttatattaatgatcggagggtgta 15712266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 32398088 - 32398139
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcg 186  Q
    |||||||||| ||| |||||||||| |||| |||||||||||| ||||||||    
T  32398088 atcattaattgaatgaatttaaaatatagatttttgtttataatagtgatcg 32398139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 694283 - 694213
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtga 183  Q
    ||||||| |||||| || ||| || ||||||| |||||||||||||| || | |||||||||||| |||||    
T  694283 gtctataataaagatcatatacataattaattgaataaatttaaaatttatatttttgtttataatagtga 694213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 15549413 - 15549471
Alignment:
Q  138 attaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    ||||||| ||| ||| |||||||| || |||||||||||| ||||| ||||||||||||    
T  15549413 attaattgaatgaatctaaaatgttgatttttgtttataatagtgaccggagggtgtat 15549471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 33652658 - 33652712
Alignment:
Q  142 attaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||||||||||||| || | |||| ||||||| |||||||||| |||||||    
T  33652658 attaaataaatttaaaatatatatttttatttataatagtgatcggatggtgtat 33652712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 694280 - 694341
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatc 185  Q
    |||||||||| || ||| ||||||||||  |||||||| || |||||||||||| |||||||    
T  694280 agaccacatacataatttattaaataaacctaaaatgttgatttttgtttataagagtgatc 694341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 23914915 - 23914835
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||||||| |||||||||| |||  || ||||| || || ||||| |||||  ||||| ||||||||||||    
T  23914915 tataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgtat 23914835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 25773307 - 25773386
Alignment:
Q  114 tctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||| ||||||||| ||| |||||||||| | | ||| ||||||||| | ||||||||||   ||||| ||||||||||||    
T  25773307 tctataataaagaccatatacatcattaattgattgaatgtaaaatgtaaatttttgtttat---agtgaccggagggtgtat 25773386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 26300185 - 26300105
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||||||| |||||||||| |||  || ||||| ||| | ||||| |||||  ||||| ||||||||||||    
T  26300185 tataataaagaccacatacatcattaattgaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggtgtat 26300105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 31785938 - 31786022
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    ||||||| || ||| |||||| || ||| ||||||| ||||||||| || || ||||| |||||||||||| | || ||||||||    
T  31785938 gtctataatatagatcacatacataatttattaaatgaatttaaaaggttgatttttgcttataacagtgaccagaaggtgtatt 31786022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 31963585 - 31963513
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||| |||||| | ||||| ||| ||||||| | |||||||||||||| ||||| |||| |||||||    
T  31963585 agactacatacatcatttaataaatgaatctaaaatgcaaaattttgtttataatagtgaccggaaggtgtat 31963513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 43482835 - 43482899
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    ||||||| |||||| || ||| |||||||| | ||||||| ||||||||| | ||||||||||||    
T  43482835 gtctataataaagatcatatacatcattaaatgaataaatataaaatgtaaatttttgtttataa 43482899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 4760462 - 4760368
Alignment:
Q  18 aatggaaatcatggccatgtgtttttgaaaatgaatggcagatatcaattcgtggttttcgtggatagctgattcataggagcaagcattttcca 112  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | ||||  ||||| |||||||||||||    
T  4760462 aatggaaatcatggccatgtgtttatgaaaatggatggcggatatcaagtcgtggttttcgtggataacagatttgtaggaacaagcattttcca 4760368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 9492753 - 9492689
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    ||||||| ||||||||||||| || ||||||||||||||| ||||||||| | ||||||||||||    
T  9492753 gtctataataaagaccacatacataattaattaaataaatctaaaatgtaaatttttgtttataa 9492689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 24694313 - 24694381
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtattaatttt 203  Q
    ||||||||||||||||||  ||||||| || |||||||||||| |||||||||||| |||| |||||||    
T  24694313 atcattaattaaataaatcaaaaatgttgatttttgtttataatagtgatcggaggatgtactaatttt 24694381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 43177143 - 43177083
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||||||||||||| ||||||||||||||| |||||||||||| |||| ||||| ||||||    
T  43177143 atcattaattaaatgaatttaaaatgtagatttttgtttataatagtggtcggaaggtgta 43177083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 42929083 - 42929005
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggaggg 191  Q
    |||||||  |||||||||||| |||||||||| ||| ||| |||||| |||||||||| |||||| ||||| |||||||    
T  42929083 gtctataagaaagaccacatagatcattaattgaatgaatataaaatttagaattttgcttataatagtgaccggaggg 42929005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 8150008 - 8150073
Alignment:
Q  126 accacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggaggg 191  Q
    |||||||||||| || ||| |||||||||||||||| || |||||||||||| |||||| ||||||    
T  8150008 accacatatatcgtttattgaataaatttaaaatgttgatttttgtttataatagtgattggaggg 8150073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 22153119 - 22153073
Alignment:
Q  130 catatatcattaattaaataaatttaaaatgtagaattttgtttata 176  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||    
T  22153119 catatatcattaattaaatatatttaaaaagtagatttttgtttata 22153073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 10872738 - 10872818
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||| ||| |||||||||| ||| ||| |||||| || | ||||| |||||| ||||| ||||||||||||    
T  10872738 tataataaagaccatatacatcattaattgaatgaatctaaaatataaatttttgcttataatagtgaccggagggtgtat 10872818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 40639869 - 40639941
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||||| |||||| | | |||||||||||||||| || ||||| |||||| |||||||| | |||||||    
T  40639869 agaccacatacatcatttaatgaataaatttaaaatgttgatttttgcttataatagtgatcgaaaggtgtat 40639941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 53638468 - 53638424
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaa 157  Q
    ||||||| ||||||| | |||||||||||||||||||||||||||    
T  53638468 gtctataataaagacaatatatatcattaattaaataaatttaaa 53638424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 27224642 - 27224575
Alignment:
Q  128 cacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||||| |||||| | | ||||||| |||||||| || |||||||||||| ||||| |||||||||||    
T  27224642 cacatacatcatttaatgaataaatctaaaatgttgatttttgtttataatagtgaccggagggtgta 27224575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 37807574 - 37807504
Alignment:
Q  126 accacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||| |||||| | | ||||||||||||||||  | ||||||||||||||||||   ||||||||||    
T  37807574 accacatacatcattcaatgaataaatttaaaatgttaatttttgtttataacagtgacatgagggtgtat 37807504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 42681245 - 42681187
Alignment:
Q  125 gaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtga 183  Q
    |||||||||||||||| ||||||| ||||||||||||| | ||||  |||||| |||||    
T  42681245 gaccacatatatcatttattaaatgaatttaaaatgtaaatttttacttataatagtga 42681187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 20625303 - 20625246
Alignment:
Q  126 accacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtga 183  Q
    |||||||| |||||| | ||||| |||||||||||| || |||||||||||| |||||    
T  20625303 accacatacatcatttaataaatgaatttaaaatgttgatttttgtttataatagtga 20625246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 51617397 - 51617478
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    |||| ||||||||||||| | |||||||| |||  || ||||| || |||||||| |||||  ||||| |||||||||||||    
T  51617397 tataataaagaccacatacaacattaattgaatgtatctaaaaagtggaattttgcttatattagtgaccggagggtgtatt 51617478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 20619060 - 20619004
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    ||||||||| |||||||||||||| ||| |||  |||||||| | ||||||||||||    
T  20619060 taaagaccatatatatcattaattgaatgaatgcaaaatgtaaatttttgtttataa 20619004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 26244454 - 26244526
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||||| |||||| | | ||||||| ||||||| | |||||||  ||||| ||||| ||||||||||||    
T  26244454 agaccacatacatcatttaatgaataaatctaaaatgcaaaattttgcctataatagtgaccggagggtgtat 26244526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 29720142 - 29720218
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggt 192  Q
    |||| ||||||||||||| ||||||||||||||  |||||||| ||  | ||||| |||||  ||||| ||||||||    
T  29720142 tataataaagaccacatacatcattaattaaatgtatttaaaaagtgaatttttgcttatattagtgaccggagggt 29720218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 50603590 - 50603538
Alignment:
Q  125 gaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    ||||||||| |||||| ||| ||| ||||||||| ||| ||||||||||||||    
T  50603590 gaccacatacatcatttattgaatgaatttaaaaagtaaaattttgtttataa 50603538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 43848489 - 43848583
Alignment:
Q  18 aatggaaatcatggccatgtgtttttgaaaatgaatggcagatatcaattcgtggttttcgtggatagctgattcataggagcaagcattttcca 112  Q
    ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||||||||||||| | ||||| ||||| |||||||||||||    
T  43848489 aatggaaatcatggccatgtgcttatgaaaatggatggcggatatcaagtcgtggttttcgtggataacagattcgtaggaacaagcattttcca 43848583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 1961386 - 1961304
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| ||||||||| ||| ||||||||||||| |||| ||||||||| | ||||| |||||| |||||||||||||||||    
T  1961386 gtctataataaagaccatatacatcattaattaaacaaatctaaaatgtaaatttttgcttataatagtgatcggagggtgta 1961304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 41805351 - 41805267
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    ||||||| ||||||| | ||| |||||||||| ||| ||||||||||| | ||||||| |||||| ||||| |||||||||||||    
T  41805351 gtctataataaagactatatacatcattaattgaatgaatttaaaatgcaaaattttgcttataatagtgaccggagggtgtatt 41805267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 15119840 - 15119922
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| ||||||| | ||| |||||||| | ||||||| ||||||||||| ||||| |||||| ||||| |||||||||||    
T  15119840 gtctataataaagacaatatacatcattaaatgaataaatctaaaatgtagatttttgcttataatagtgaccggagggtgta 15119922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 29819836 - 29819765
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||||||||| |||||||| ||||| || |||||||||||  |||||||||||  ||||| |||||||||||    
T  29819836 agaccacatacatcattaaataaatgaacttaaaatgtagttttttgtttatattagtgaccggagggtgta 29819765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 1981048 - 1980979
Alignment:
Q  127 ccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    ||||||| |||||||||| |||  ||||||||||| |||||||| |||||  ||||| ||||||||||||    
T  1981048 ccacataaatcattaattgaatgtatttaaaatgtggaattttgcttatattagtgaccggagggtgtat 1980979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 32630484 - 32630419
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    |||||||| ||||||||| ||| |||||||||| ||| |||  |||||||||| ||||||||||||    
T  32630484 agtctataataaagaccatatacatcattaattgaatgaatccaaaatgtagatttttgtttataa 32630419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 5574176 - 5574256
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||||||| |||||||||| |||  || ||||| ||||| ||||| |||||  ||||| ||||||||||||    
T  5574176 tataataaagaccacatacatcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgtat 5574256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 10602357 - 10602441
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    ||||||| ||||||||| ||| |||||||||| ||| || ||||| |||| | ||||  |||||| ||||| |||||||||||||    
T  10602357 gtctataataaagaccatatacatcattaattgaatgaacttaaattgtatattttttcttataatagtgaccggagggtgtatt 10602441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 26003501 - 26003581
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||| ||| |||||||||| ||| ||| ||||||||||| ||||| |||||| |||||  ||| |||||||    
T  26003501 tataataaagaccatatacatcattaattgaatgaatctaaaatgtagatttttgcttataaaagtgactggatggtgtat 26003581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 32143470 - 32143398
Alignment:
Q  126 accacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatta 198  Q
    |||||||| |||||| | ||||| ||||||||||||| | ||||| |||||| ||||| |||||||| |||||    
T  32143470 accacatacatcatttaataaatgaatttaaaatgtaaagttttgcttataatagtgaccggagggtatatta 32143398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 26234087 - 26234174
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtattaat 200  Q
    ||||||| |||||||||  |  |||||||| | ||| ||| ||||||||| | ||||| |||||| ||||| ||||||||||||||||    
T  26234087 gtctataataaagaccatgtgcatcattaaatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgtattaat 26234174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 36547417 - 36547354
Alignment:
Q  114 tctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    |||||| |||||| |||||| |||||| ||||||| ||||||||||||  | ||||||||||||    
T  36547417 tctatattaaagatcacatacatcatttattaaatgaatttaaaatgtcaatttttgtttataa 36547354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 38465860 - 38465943
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtattaatttta 204  Q
    ||||||||| ||| |||||||||| ||| ||| ||||||||||| ||||| ||| || |||||  |||||||||| | ||||||    
T  38465860 taaagaccatatacatcattaattgaatgaatctaaaatgtagatttttgcttacaatagtgactggagggtgtacttatttta 38465943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 44868578 - 44868519
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtga 183  Q
    ||||||| || | |||||||| |||||||||||||||| || |||||||||||| |||||    
T  44868578 agaccacgtacaacattaattgaataaatttaaaatgttgatttttgtttataatagtga 44868519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 7079436 - 7079370
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagg 190  Q
    ||||||||||||||||| | |  || |||||||||||| || ||||| |||||| ||||||||||||    
T  7079436 agaccacatatatcatttaatggatgaatttaaaatgttgatttttgcttataatagtgatcggagg 7079370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 15900290 - 15900364
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||||||||| |||||| ||||||||||| |||||| |  | |||| ||||||| ||||||| || ||||||    
T  15900290 taaagaccacatacatcatttattaaataaatgtaaaatattaatttttatttataatagtgatcagaaggtgta 15900364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 38465854 - 38465776
Alignment:
Q  125 gaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtattaatttt 203  Q
    ||||||||| |||||| | | ||| ||| |||||||| || ||||| |||||| ||||| ||||||||||||| |||||    
T  38465854 gaccacatacatcatttaatgaattaatctaaaatgttgatttttgcttataatagtgaccggagggtgtattcatttt 38465776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 4605633 - 4605576
Alignment:
Q  129 acatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcg 186  Q
    ||||| |||||| |||||||||||||||||| |  |||||| ||||||| ||||||||    
T  4605633 acataaatcatttattaaataaatttaaaatattaaattttatttataatagtgatcg 4605576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 11342055 - 11342108
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcgga 188  Q
    |||||||||||||| ||| |||||| |||| ||||| |||||| ||||||||||    
T  11342055 atcattaattaaatgaatctaaaatatagatttttgcttataatagtgatcgga 11342108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 38181831 - 38181908
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatta 198  Q
    ||||||| | ||| |||||||||| ||| ||| ||||||||||  ||||| |||||| ||| | ||||||||||||||    
T  38181831 taaagactatatacatcattaattgaatgaatgtaaaatgtagttttttgcttataatagtaaccggagggtgtatta 38181908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 10041619 - 10041563
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaatttt 169  Q
    ||||||| || | |||||||| |||||||||||||| ||| ||||||||| ||||||    
T  10041619 gtctatattataaaccacatacatcattaattaaatgaatctaaaatgtaaaatttt 10041563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 21183401 - 21183473
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||||| |||||| | | ||| ||| |||||||| || ||||| |||||||||||| |||||| |||||    
T  21183401 agaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataacagtgaccggaggatgtat 21183473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 27497330 - 27497409
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtg 193  Q
    ||||||| ||||||||| ||| || ||||| ||||  ||| |||||||||| ||||| ||||||| | |||||||||||||    
T  27497330 gtctataataaagaccatatacattattaaataaaggaatctaaaatgtag-attttttttataataatgatcggagggtg 27497409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 32143492 - 32143552
Alignment:
Q  136 tcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    ||||||||| ||| ||||||||||||| | ||||| |||||||||||| || | |||||||    
T  32143492 tcattaattgaatgaatttaaaatgtaaagttttgcttataacagtgaccgcatggtgtat 32143552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 32308322 - 32308406
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    ||||||| || ||| |||||| || ||| ||||||| |||||| || ||  | ||||| |||||| |||||||||||||||||||    
T  32308322 gtctataatatagatcacatacataatttattaaatgaatttataaggttaatttttgcttataatagtgatcggagggtgtatt 32308406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 40187314 - 40187370
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    ||||||||||||| |||||||| | ||| ||| ||||||||| | ||||||||||||    
T  40187314 taaagaccacatacatcattaactgaatcaatctaaaatgtaaatttttgtttataa 40187370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 28321634 - 28321708
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||||||| ||||| | |||||||||||||||||    
T  28321634 taaagactatatatatcattaattgaataaatctaaaatgtagaattttatttatgatagtgatcggagggtgta 28321708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 23797410 - 23797493
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||||||| ||||||||| ||| |||||||||| ||| ||| ||||||| | ||||||  |||||| ||||| |||||||||||    
T  23797410 agtctataataaagaccagatacatcattaattgaatgaatctaaaatgcaaaattttacttataatagtgaccggagggtgta 23797493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 6455623 - 6455696
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    |||||||||| |||||||| | ||| ||  ||||||||||| ||||| |||||  |||||||||||||||||||    
T  6455623 agaccacatacatcattaaatgaatgaacctaaaatgtagatttttgcttatattagtgatcggagggtgtatt 6455696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 29498857 - 29498776
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    |||| ||||||||||||| |||||||||| |||| || |||||||| || ||||| |||||  | |||||||||||| ||||    
T  29498857 tataataaagaccacatacatcattaattgaatatatctaaaatgtggatttttgcttatattattgatcggagggtttatt 29498776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 30138851 - 30138935
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    ||||||| ||||||| | ||| |||||||||| ||| ||| ||||||||| | ||||  ||||||||||||||||| ||| ||||    
T  30138851 gtctataataaagactatatacatcattaattgaatgaatctaaaatgtaaatttttacttataacagtgatcggatggtttatt 30138935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 39960304 - 39960376
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcgga 188  Q
    |||| |||| || |||||||||||||||| ||| |||||||||| || | |||| ||||||||||| ||||||    
T  39960304 tataataaaaactacatatatcattaattgaatgaatttaaaatataaatttttatttataacagtaatcgga 39960376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 41803799 - 41803711
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtattaatt 201  Q
    ||||||| |||||||||  |  |||||||| ||||||||| ||||||||||| ||||  |||||| ||||| |||||||| || |||||    
T  41803799 gtctataataaagaccatgtgcatcattaaataaataaatctaaaatgtagattttttgttataatagtgaccggagggtatactaatt 41803711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 46495430 - 46495494
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttata 176  Q
    |||||||| ||||||  | ||| |||||||||||||||||||||||||||| | |||| ||||||    
T  46495430 agtctataataaagataatatacatcattaattaaataaatttaaaatgtatatttttatttata 46495494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 2456413 - 2456330
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    ||||||| ||| | ||||||| |||||||||| ||| ||  ||||| ||||| ||||| |||||| ||||||||||||| ||||    
T  2456413 gtctatattaatgtccacatacatcattaattcaatgaacctaaaaagtagatttttgcttataatagtgatcggagggagtat 2456330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 6455626 - 6455543
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    ||||||| |||||||||  |  |||||||| | ||| ||| ||||||||| | ||||| |||||| ||||||||||||||||||    
T  6455626 gtctataataaagaccatgtgcatcattaaatgaatgaatctaaaatgtaaatttttgcttataatagtgatcggagggtgtat 6455543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 28229052 - 28228977
Alignment:
Q  126 accacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtattaatt 201  Q
    |||||||  |||||| ||||||| ||  ||||||||  ||||||| |||||| |||||||||||| ||||||||||    
T  28229052 accacatgcatcatttattaaatgaagctaaaatgttaaattttgcttataatagtgatcggaggatgtattaatt 28228977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 31813488 - 31813413
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcgga 188  Q
    ||||||| | ||||||| ||| |||||||||| ||| ||| ||||||||| | |||||||||||| ||||| ||||    
T  31813488 gtctataatgaagaccatatacatcattaattgaatgaatctaaaatgtaaatttttgtttataatagtgaccgga 31813413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 32558588 - 32558533
Alignment:
Q  128 cacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtga 183  Q
    ||||||||||||| ||| || ||||  |||||||||| ||||||||||||||||||    
T  32558588 cacatatatcatttattcaacaaataaaaaatgtagatttttgtttataacagtga 32558533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 9555329 - 9555255
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| | ||| |||||||||| ||||||||||||||||| ||||||  |||| | ||||| |||| ||||||    
T  9555329 taaagactatatacatcattaattgaataaatttaaaatgtaaaattttacttatgatagtgaccggatggtgta 9555255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 26477227 - 26477297
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcg 186  Q
    |||| |||||| || ||| |||||||||||||||||| | |||| || | |||||||||||| ||||||||    
T  26477227 tatattaaagatcatatacatcattaattaaataaatcttaaatataaatttttgtttataatagtgatcg 26477297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 26553667 - 26553737
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcg 186  Q
    |||| |||||| || ||| |||||||||||||||||| | |||| || | |||||||||||| ||||||||    
T  26553667 tatattaaagatcatatacatcattaattaaataaatcttaaatataaatttttgtttataatagtgatcg 26553737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 26385688 - 26385737
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgta 162  Q
    ||||||| ||||||||||||| |||||||||||||| ||| | |||||||    
T  26385688 gtctataataaagaccacatacatcattaattaaatgaatcttaaatgta 26385737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 32490655 - 32490602
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    |||| ||||| |||||||||||||| ||| ||||||||| | ||||||||||||    
T  32490655 agacaacatacatcattaattaaatgaatctaaaatgtaaagttttgtttataa 32490602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 43103132 - 43103059
Alignment:
Q  130 catatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtattaatttt 203  Q
    |||| |||||| | ||||| ||||||||||||  | ||||| |||||| ||||| |||||||||||||| ||||    
T  43103132 catacatcatttaataaatgaatttaaaatgttaatttttgcttataatagtgaccggagggtgtattattttt 43103059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 45002128 - 45002071
Alignment:
Q  138 attaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| ||| ||||||||||||| | |||||||||||| |||||  ||||||||||    
T  45002128 attaattgaatgaatttaaaatgtaaagttttgtttataatagtgactggagggtgta 45002071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 6803447 - 6803519
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||| ||| ||||| |||| ||| |||||||||| | || |||||||||||| |||||| |||| ||||||    
T  6803447 agaccatatacatcatcaattgaatgaatttaaaatattgatttttgtttataatagtgattggagtgtgtat 6803519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 7295134 - 7295202
Alignment:
Q  128 cacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||| |||||| | ||||| ||| ||||||||  | |||||||||||| | ||||||||||||||||    
T  7295134 cacatacatcatttaataaatgaatgtaaaatgttaatttttgtttataataatgatcggagggtgtat 7295202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 25245217 - 25245289
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||||| |||||| | | ||| ||| |||||||| || ||||| |||||| ||||| ||||||||||||    
T  25245217 agaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgaccggagggtgtat 25245289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 31319594 - 31319562
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaatt 144  Q
    |||||||| ||||||||||||||||||||||||    
T  31319594 agtctataataaagaccacatatatcattaatt 31319562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 89662 - 89744
Alignment:
Q  114 tctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttg-tttataacagtgatcggagggtgta 195  Q
    |||||| |||||| || ||| |||||||||| ||||||||||||||||| | ||||| ||||||| |||||||||||||||||    
T  89662 tctataataaagatcatatacatcattaattgaataaatttaaaatgtaaatttttgttttataatagtgatcggagggtgta 89744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 20704086 - 20704156
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtga 183  Q
    ||||||| ||||||||| ||| |||||||||| |||||||||| |||||| ||||||| ||||||||||||    
T  20704086 gtctataataaagaccatatacatcattaattgaataaatttagaatgtaaaattttgattataacagtga 20704156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 14218263 - 14218324
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||||||| || || ||||||    
T  14218263 tataataaagaccatatacatcattaattaaataaatttaaaatgtagatttatgcttataa 14218324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 11746294 - 11746379
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtattaatt 201  Q
    |||| |||||| || ||| |||||||||| ||| ||| ||||||||| | |||| ||||||||||||| | |||||||||| ||||    
T  11746294 tataataaagatcatatacatcattaattgaatgaatctaaaatgtaaatttttttttataacagtgaccagagggtgtataaatt 11746379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 12383651 - 12383727
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcgga 188  Q
    |||||||| |||||| ||  || |||||||||| ||| ||| ||||||||||| |||||||||||| ||||| ||||    
T  12383651 agtctataataaagatcatgtacatcattaattgaattaatctaaaatgtagatttttgtttataatagtgaccgga 12383727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 13506912 - 13506828
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||| |||||| || ||| |||||||||||||| ||||||| ||||| | ||||| |||||| ||||| || ||| |||||    
T  13506912 agtctataataaagatcatatacatcattaattaaatgaatttaagatgtaaacttttgcttataatagtgaccgaaggatgtat 13506828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 30397788 - 30397717
Alignment:
Q  127 ccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatta 198  Q
    ||||||| |||||||||| |||  || |||||||| || |||||||||||  ||||| ||||||||||||||    
T  30397788 ccacatacatcattaattgaatgtatctaaaatgtggatttttgtttatattagtgaccggagggtgtatta 30397717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 32254883 - 32254966
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||||||| ||||||||||||| |||||| | | ||| ||| |||||| |  | ||||| |||||| |||||||||||||||||    
T  32254883 agtctataataaagaccacatacatcatttaatgaatgaatctaaaatattaacttttgcttataatagtgatcggagggtgta 32254966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 11637247 - 11637165
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| |||||| || ||| |||||||||| ||| |||||||||||||   ||||| |||||| ||||| ||||| |||||    
T  11637247 gtctataataaagatcatatacatcattaattgaatgaatttaaaatgtaatgttttgcttataatagtgaccggagagtgta 11637165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 28555010 - 28555092
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| |||||||||  |  |||||||| ||||| ||| ||||||||||| ||||| |||||| ||||| | |||||||||    
T  28555010 gtctataataaagaccatgtgcatcattaaataaatgaatctaaaatgtagatttttgcttataatagtgaccagagggtgta 28555092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 18097115 - 18097055
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||||||| ||||| ||| ||||||||| | ||||| |||||| ||||| |||||||||||    
T  18097115 atcattaaataaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 18097055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 45045439 - 45045517
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagg 190  Q
    |||||||| ||||||||| ||| |||||||||| ||| ||| |||||| |||| |||||||||||| ||||||| ||||    
T  45045439 agtctataataaagaccatatacatcattaattgaatgaatctaaaatatagatttttgtttataatagtgatcagagg 45045517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 13080150 - 13080215
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    ||||| || ||||||||||||| |||||||||| ||| ||| ||||||||||| ||||||||||||    
T  13080150 agtctttaataaagaccacatacatcattaattcaatgaatgtaaaatgtagatttttgtttataa 13080215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 15232354 - 15232415
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||||| ||| |||||| || || |||||||||||||| |||||||||||||||||||    
T  15232354 atcattaattgaatgaatttagaaagtggaattttgtttatatcagtgatcggagggtgtat 15232415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 10934672 - 10934598
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| ||||| |||||||||||||| ||| |||||| |||  ||||| |||||| ||||| |||||||||||    
T  10934672 taaagactacatacatcattaattaaatgaatgtaaaatatagttttttgcttataatagtgaccggagggtgta 10934598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 13964496 - 13964414
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| || |||||||||| |||||| ||| ||| |||||||||||| || ||||| |||||| ||||| | |||||||||    
T  13964496 gtctataatatagaccacatacatcatttattgaatgaatttaaaatgttgatttttgcttataatagtgaccagagggtgta 13964414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 3225857 - 3225801
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaatttt 169  Q
    ||||||| |||||| || ||| |||||||||| ||||||||||||||||||| ||||    
T  3225857 gtctataataaagatcatatacatcattaattgaataaatttaaaatgtagattttt 3225801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 27518400 - 27518460
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||||||| | ||| ||| ||||||||||| |||||||||||| ||||| |||||||||||    
T  27518400 atcattaaatgaatgaatctaaaatgtagatttttgtttataatagtgaccggagggtgta 27518460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 467980 - 468027
Alignment:
Q  114 tctatagtaaagaccacatatatcattaattaaataaatttaaaatgt 161  Q
    |||||| ||||||| | |||||||||||||||||||||| ||||||||    
T  467980 tctataataaagactatatatatcattaattaaataaatctaaaatgt 468027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 13496498 - 13496581
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    ||||||| |||||||||  |  |||||||| | ||| ||||||||||||| | ||||| |||||| ||||| ||||||||||||    
T  13496498 gtctataataaagaccatgtgcatcattaaatgaatgaatttaaaatgtaaatttttgcttataatagtgaccggagggtgtat 13496581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 31810411 - 31810328
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    ||||||| |||||||||  |  |||||||| | ||| ||| |||||||||| |||||| |||||| ||||| ||||||||||||    
T  31810411 gtctataataaagaccatgtgcatcattaaatgaatgaatctaaaatgtagcattttgcttataatagtgaccggagggtgtat 31810328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 33070227 - 33070310
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||||||| ||||||||| ||| | |||||| | ||| ||| ||||||| | ||||||| |||||| ||||| |||||||||||    
T  33070227 agtctataataaagaccatatacaccattaaatgaatgaatctaaaatgcaaaattttgcttataatagtgaccggagggtgta 33070310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 36916660 - 36916585
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcgga 188  Q
    ||||||| ||||||| | |||||||||||||| ||||||| ||||||| | ||||||  |||||| ||||| ||||    
T  36916660 gtctataataaagactaaatatatcattaattgaataaatctaaaatgcaaaattttacttataatagtgaccgga 36916585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 3444677 - 3444615
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    |||||||||| ||| ||| ||||||||| | |||||||||||| ||||||| || ||||||||    
T  3444677 atcattaattgaatgaatataaaatgtaaatttttgtttataatagtgatctgaaggtgtatt 3444615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 25268030 - 25267988
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||    
T  25268030 atcattaattaaatgaatctaaaatgtagatttttgtttataa 25267988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 40098822 - 40098752
Alignment:
Q  128 cacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatta 198  Q
    ||||||||||||||||| |||  || ||||| ||||| ||||| |||||  ||||| ||||||||||||||    
T  40098822 cacatatatcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgtatta 40098752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 44525145 - 44525103
Alignment:
Q  141 aattaaataaatttaaaatgtagaattttgtttataacagtga 183  Q
    |||||||||||||||||||||| ||||||| |||||| |||||    
T  44525145 aattaaataaatttaaaatgtaaaattttgcttataatagtga 44525103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 28882738 - 28882807
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtg 193  Q
    ||||||||||||||||| ||| ||||||  ||||| || || ||||| |||||| ||||| |||||||||    
T  28882738 agaccacatatatcatttattgaataaacctaaaaggttgatttttgcttataatagtgaccggagggtg 28882807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 2805876 - 2805940
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    ||||||| |||||| || ||| || ||||||| ||| ||||||||||||| |||||| |||||||    
T  2805876 gtctataataaagatcatatacattattaattgaatgaatttaaaatgtaaaattttatttataa 2805940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 13211313 - 13211281
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaat 148  Q
    |||| ||||||||||||||||||||||||||||    
T  13211313 tataataaagaccacatatatcattaattaaat 13211281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 20546709 - 20546757
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaatttt 169  Q
    ||||||||  |||||||||||||| ||| ||||||||||||||| ||||    
T  20546709 taaagaccttatatatcattaattgaattaatttaaaatgtagattttt 20546757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 40098826 - 40098906
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||||||| |||||||||| |||  || ||||| || || ||||| |||||  ||||| ||||||||||||    
T  40098826 tataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgtat 40098906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 22558937 - 22558891
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgta 162  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  22558937 tataataaagaccacatatatcattaattaaataaatttataatgta 22558891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 17342416 - 17342344
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtg 193  Q
    |||||| ||| || |||||||| ||||||||| ||||||||| | ||||| |||||||||||| |||||||||    
T  17342416 taaagatcacgtacatcattaagtaaataaatgtaaaatgtaaatttttgcttataacagtgaccggagggtg 17342344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 31008333 - 31008253
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||||||| ||||||||||||||  || ||||| ||||| ||||| |||||  ||||| ||||||||||||    
T  31008333 tataataaagaccacatacatcattaattaaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgtat 31008253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 33289060 - 33289108
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataacagtga 183  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||    
T  33289060 atcattaattaaataaatctaaaatgtagatctttgtttataacagtga 33289108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 34953959 - 34954039
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtg 193  Q
    ||||||| ||||||||| ||| |||||||||| ||| ||| |||||| || | ||||| |||||| |||||||||||||||    
T  34953959 gtctataataaagaccatatacatcattaattgaatgaatctaaaatataaatttttgcttataatagtgatcggagggtg 34954039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 45115236 - 45115165
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||||||||||||||| | ||||||  |||||| |||| ||||| |||||  |||||||||||||||||    
T  45115236 agaccacatatatcattaaatgaataaacctaaaatatagatttttgcttatattagtgatcggagggtgta 45115165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 10832057 - 10832135
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggaggg 191  Q
    ||||||| |||||| || ||||| |||||||| ||| ||  ||||||||||| |||||||||||| ||||| |||||||    
T  10832057 gtctataataaagatcatatataccattaattgaatgaacctaaaatgtagatttttgtttataatagtgaccggaggg 10832135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 11324495 - 11324572
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggag 189  Q
    |||||||| ||||||||| ||| |||||||||| ||| ||||||||||||  | |||| ||||||  |||||||||||    
T  11324495 agtctataataaagaccatatacatcattaattgaatgaatttaaaatgttaatttttatttatattagtgatcggag 11324572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 11482516 - 11482593
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggag 189  Q
    |||||||| ||||||||| ||| |||||||||| ||| ||||||||||||  | |||| ||||||  |||||||||||    
T  11482516 agtctataataaagaccatatacatcattaattgaatgaatttaaaatgttaatttttatttatattagtgatcggag 11482593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 17490557 - 17490480
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatta 198  Q
    ||||||||||||||||||||||||||||  || ||||| || || ||||| |||||  ||||| |||||||| |||||    
T  17490557 taaagaccacatatatcattaattaaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtctatta 17490480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 3549856 - 3549792
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    ||||||| ||||||||  |||||||||||||| ||| ||| ||||||||||| ||||| ||||||    
T  3549856 gtctataataaagaccgtatatatcattaattgaatgaatctaaaatgtagatttttgcttataa 3549792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 18607166 - 18607221
Alignment:
Q  131 atatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcg 186  Q
    |||||| ||||||| ||| |||||||||| |||| |||||||||||| ||||||||    
T  18607166 atatattattaattgaatgaatttaaaatatagatttttgtttataatagtgatcg 18607221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 45115233 - 45115316
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    ||||||| |||||||||  |  |||||||| | ||| ||| ||||||||||| ||||| |||||| ||||| ||||||||||||    
T  45115233 gtctataataaagaccatgtgcatcattaaatgaatgaatctaaaatgtagatttttgcttataatagtgaccggagggtgtat 45115316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 183951 - 183893
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataaca 179  Q
    |||||| |||||| |||||| ||||||| ||||||||||||  |||||| |||||||||    
T  183951 taaagaacacatacatcatttattaaatgaatttaaaatgttaaattttatttataaca 183893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 14365428 - 14365498
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtga 183  Q
    |||||||  ||||| || |||||||||||||||||| ||| |||||| || | |||||||||||| |||||    
T  14365428 gtctataaaaaagatcatatatatcattaattaaatgaatataaaatatatatttttgtttataatagtga 14365498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 40262534 - 40262612
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||||||| ||||||||||||||  |||||||  || || ||||| |||||  ||||| ||||||||||||    
T  40262534 tataataaagaccacatacatcattaattaaatgtatttaaa--gtggatttttgcttatattagtgaccggagggtgtat 40262612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 1597258 - 1597202
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    |||||| || ||| |||||||||| ||||||||||||||||| | ||| ||||||||    
T  1597258 taaagatcatatacatcattaattgaataaatttaaaatgtatattttcgtttataa 1597202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 5753249 - 5753205
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattt 168  Q
    |||||||||| ||||||||||||||||| |||||| ||| |||||    
T  5753249 agaccacatacatcattaattaaataaacttaaaaagtaaaattt 5753205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 22558942 - 22558990
Alignment:
Q  129 acatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    |||||| ||||| ||||||| ||| |||||||| |||||||||||||||    
T  22558942 acatatttcatttattaaatgaatctaaaatgtggaattttgtttataa 22558990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 26423488 - 26423456
Alignment:
Q  126 accacatatatcattaattaaataaatttaaaa 158  Q
    |||||||| ||||||||||||||||||||||||    
T  26423488 accacatacatcattaattaaataaatttaaaa 26423456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 33604057 - 33604137
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||||||| |||||||||| |||  || ||||| || || ||||| |||||  ||||| ||||||||||||    
T  33604057 tataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgtat 33604137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 41007740 - 41007804
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataa 177  Q
    ||||||| ||||||||||||| |||||| | | ||| ||| |||||||| |||||||| ||||||    
T  41007740 gtctataataaagaccacatacatcatttaatgaatgaatctaaaatgttgaattttgcttataa 41007804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 43728245 - 43728193
Alignment:
Q  131 atatatcattaattaaataaatttaaaatgtagaattttgtttataacagtga 183  Q
    |||||||||||||||||| ||  |||||| |||| |||||||||||| |||||    
T  43728245 atatatcattaattaaattaacctaaaatatagatttttgtttataatagtga 43728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 46412763 - 46412835
Alignment:
Q  125 gaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    ||||| ||| |||||||||| ||| |||  |||||||| | ||||  |||||| |||||||||||||||||||    
T  46412763 gaccatatacatcattaattgaatgaatccaaaatgtaaatttttacttataatagtgatcggagggtgtatt 46412835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 47599969 - 47599929
Alignment:
Q  128 cacatatatcattaattaaataaatttaaaatgtagaattt 168  Q
    |||||| |||||||||| ||||||||||||| |||||||||    
T  47599969 cacatacatcattaattgaataaatttaaaaagtagaattt 47599929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 48022669 - 48022589
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||||||| |||||||||| |||  || ||||| || || ||||| |||||  ||||| ||||||||||||    
T  48022669 tataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgtat 48022589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 36072648 - 36072564
Alignment:
Q  112 agtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||| ||||||||| ||| ||||| |||| ||| ||| ||||||| | ||||||| |||||| ||||| ||||||||||||    
T  36072648 agtctataataaagaccatatacatcataaattgaatgaatctaaaatgcaaaattttgcttataatagtgaccggagggtgtat 36072564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 51829228 - 51829176
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattt-tgtttataacagtgatcg 186  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  51829228 atcattaattaaataaatttaaaatgtagattttatttttataacagtgatcg 51829176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 14451033 - 14450951
Alignment:
Q  114 tctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||| |||||||||  |  |||||||| | ||| ||| ||||||||||| ||||| |||||| ||||||||||||||||||    
T  14451033 tctataataaagaccatgtgcatcattaaatgaatgaatctaaaatgtagatttttgcttataatagtgatcggagggtgtat 14450951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 45186524 - 45186471
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaatttt 169  Q
    |||| ||||||| | |||||| ||||||||||||||||||||||||||| ||||    
T  45186524 tataataaagacgatatatatgattaattaaataaatttaaaatgtagattttt 45186471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 19934704 - 19934632
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||||| |||||| ||| ||| ||| ||||| || |||||||| |||||| ||||| ||||||||||||    
T  19934704 agaccacatacatcatttattgaatgaatctaaaaagtggaattttgcttataatagtgaccggagggtgtat 19934632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 54164879 - 54164807
Alignment:
Q  124 agaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||||| |||||| ||| ||| ||| ||||| || |||||||| |||||| ||||| ||||||||||||    
T  54164879 agaccacatacatcatttattgaatgaatctaaaaagtggaattttgcttataatagtgaccggagggtgtat 54164807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 5418581 - 5418660
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||| ||||||||||||| |||||||||| |||  || ||||| ||| | ||||| |||||  |||||||||||||||||    
T  5418581 tataataaagaccacatacatcattaattcaatgtatctaaaaagtaaatttttgcttatattagtgatcggagggtgta 5418660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 16203427 - 16203478
Alignment:
Q  137 cattaattaaataaatttaaaatgtagaattttgtttataacagtgatcgga 188  Q
    |||||| ||||||||| ||||||||| | |||||||||||| ||||||||||    
T  16203427 cattaaataaataaatctaaaatgtaaatttttgtttataatagtgatcgga 16203478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 19934713 - 19934784
Alignment:
Q  125 gaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    ||||||||| |||||| ||| ||| ||| |||||  |||| ||||| |||||| ||||||||||||||||||    
T  19934713 gaccacatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgatcggagggtgtat 19934784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 36786224 - 36786145
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||| ||||||| | ||| |||||||||| ||| ||| |||||||| || |||||||||||| || || |||||||||||    
T  36786224 tataataaagactatatacatcattaattgaatgaatctaaaatgttgatttttgtttataatagggaccggagggtgta 36786145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 12070074 - 12070132
Alignment:
Q  131 atatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggag 189  Q
    |||||| ||||||||||||||| |||||| |||  ||||  ||||||||||||||||||    
T  12070074 atatattattaattaaataaatctaaaatatagttttttacttataacagtgatcggag 12070132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 8826929 - 8827010
Alignment:
Q  114 tctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    |||||| ||||||||| ||| |||||||| ||||| ||| ||||||| | | ||||  || ||||| |||||||||||||||    
T  8826929 tctataataaagaccatatacatcattaaataaatgaatctaaaatgcaaagttttacttgtaacaatgatcggagggtgta 8827010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 16468289 - 16468350
Alignment:
Q  135 atcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||||||| | ||||||| ||||||||||| ||||  |||||| ||||| ||||||||||||    
T  16468289 atcattaaatgaataaatctaaaatgtagattttttattataatagtgaccggagggtgtat 16468350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 40814745 - 40814814
Alignment:
Q  126 accacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||||||||||| | | ||| ||| ||||||||  | |||||||||||||||||| || ||||||||    
T  40814745 accacatatatcatttaatgaatgaatctaaaatgttaatttttgtttataacagtgaccgaagggtgta 40814814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 484033 - 483973
Alignment:
Q  136 tcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    ||||| ||||||| ||| |||||||| || |||||||||||| | ||| ||||||||||||    
T  484033 tcattcattaaatgaatctaaaatgttgatttttgtttataataatgaccggagggtgtat 483973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 36712113 - 36712073
Alignment:
Q  128 cacatatatcattaattaaataaatttaaaatgtagaattt 168  Q
    |||||||||||||||||||||||| |||||| ||| |||||    
T  36712113 cacatatatcattaattaaataaacttaaaaagtaaaattt 36712073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 38298164 - 38298084
Alignment:
Q  116 tatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtat 196  Q
    |||| ||||||||| ||| |||||||||| ||| ||| |||||| || |||||||  ||||| | ||| ||||||||||||    
T  38298164 tataataaagaccatatacatcattaattgaatgaatctaaaatataaaattttgcgtataaaaatgaccggagggtgtat 38298084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 48860599 - 48860531
Alignment:
Q  121 taaagaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggag 189  Q
    |||| |||||||| |||||| ||| ||| ||||||||| ||| || ||| ||||||| |||||||||||    
T  48860599 taaaaaccacatacatcatttattgaatgaatttaaaaagtaaaaatttatttataatagtgatcggag 48860531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 54164888 - 54164960
Alignment:
Q  125 gaccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgtatt 197  Q
    ||||||||| |||||| ||| ||| ||| |||||  |||| ||||| |||||| ||||| |||||||||||||    
T  54164888 gaccacatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgaccggagggtgtatt 54164960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 5451 - 5507
Alignment:
Q  113 gtctatagtaaagaccacatatatcattaattaaataaatttaaaatgtagaatttt 169  Q
    ||||||| || | |||||||| |||||||||||||| ||| ||||||||| ||||||    
T  5451 gtctatattataaaccacatacatcattaattaaatgaatctaaaatgtaaaatttt 5507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 61239 - 61307
Alignment:
Q  127 ccacatatatcattaattaaataaatttaaaatgtagaattttgtttataacagtgatcggagggtgta 195  Q
    ||||||| |||||||||| |||  || |||||||| || |||||||||||  ||||| |||||||||||    
T  61239 ccacatacatcattaattgaatgtatctaaaatgtggatttttgtttatattagtgaccggagggtgta 61307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University