View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18648_low_19 (Length: 236)

Name: NF18648_low_19
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18648_low_19
NF18648_low_19
[»] chr4 (2 HSPs)
chr4 (1-214)||(9498854-9499067)
chr4 (19-66)||(56201173-56201220)
[»] chr7 (5 HSPs)
chr7 (1-134)||(18846193-18846325)
chr7 (1-134)||(15660280-15660412)
chr7 (25-182)||(47790300-47790458)
chr7 (3-70)||(36692251-36692318)
chr7 (84-182)||(15660179-15660278)
[»] chr1 (5 HSPs)
chr1 (3-134)||(34624220-34624350)
chr1 (1-130)||(20039505-20039634)
chr1 (1-130)||(29403640-29403769)
chr1 (84-154)||(29403830-29403900)
chr1 (84-152)||(20039431-20039499)
[»] chr8 (4 HSPs)
chr8 (1-134)||(20293209-20293343)
chr8 (1-134)||(21079840-21079974)
chr8 (3-130)||(13955763-13955888)
chr8 (3-124)||(2108287-2108409)
[»] chr6 (4 HSPs)
chr6 (4-125)||(29355339-29355460)
chr6 (1-132)||(19058858-19058986)
chr6 (84-154)||(19058990-19059060)
chr6 (1-54)||(7492158-7492211)
[»] chr2 (2 HSPs)
chr2 (1-106)||(23219000-23219105)
chr2 (1-53)||(44672768-44672821)
[»] chr3 (1 HSPs)
chr3 (58-130)||(28914400-28914472)
[»] scaffold0692 (1 HSPs)
scaffold0692 (19-66)||(5006-5053)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 9499067 - 9498854
Alignment:
Q  1 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9499067 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaacaaactttcttaatgtctcaccc 9498968  T
Q  101 tctaggcttcccactcttatataactgaaattcttcctagattccagtaaatatactatcttttgtattcccacagcttctataagctgtgcttgtttgg 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9498967 tctaggcttccctctcttatataactgaaattcttcctagattccagtaaatatactatcttttgtattcccacagcttctataagctgtgcttgtttgg 9498868  T
Q  201 gaaaacacatgtat 214  Q
    ||||||||||||||    
T  9498867 gaaaacacatgtat 9498854  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 56201220 - 56201173
Alignment:
Q  19 actcctaccagagctaagctcctagaccagagagaacttctctcctaa 66  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  56201220 actcctaccagagctaggctcctagaccagagagaacatctctcctaa 56201173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 18846193 - 18846325
Alignment:
Q  1 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||    
T  18846193 taaaccagagttctgagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttctgaatgcctta-cc 18846291  T
Q  101 tctaggcttcccactcttatataactgaaattct 134  Q
    ||||| || ||| ||||| |||||||||||||||    
T  18846292 tctagactcccccctcttttataactgaaattct 18846325  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 15660412 - 15660280
Alignment:
Q  1 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| || |  |    
T  15660412 taaaccagagttcagagaactcctaccagagctaagctcctagaccagaaagaacttctctcctaaacaactcttaacaaactttctgaatgcctta-tc 15660314  T
Q  101 tctaggcttcccactcttatataactgaaattct 134  Q
    ||||| || ||| ||||| |||||| ||||||||    
T  15660313 tctagactcccccctcttttataacggaaattct 15660280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 47790300 - 47790458
Alignment:
Q  25 accagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccctctaggcttcccactcttatataa 124  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||  |||||||||||| ||||| || ||  ||||    
T  47790300 accagagttaagctcctagaccagagagaacttctctcctaaacaactcttaagaaactttctgactgcttcaccctctaggattccctctgtttaataa 47790399  T
Q  125 ctgaaattcttcctagattccagtaaatatactatct-tttgtattcccacagcttcta 182  Q
    |||||||||||||| ||||||| ||| ||| |||  | ||||| |||||||||||||||    
T  47790400 ctgaaattcttccttgattccaataattattctaaatgtttgtgttcccacagcttcta 47790458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 36692318 - 36692251
Alignment:
Q  3 aaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaa 70  Q
    |||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36692318 aaccagagttctatgaactcctaccagagctaagctcctagaacagagagaacttctctcctaaacaa 36692251  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 15660278 - 15660179
Alignment:
Q  84 ttcttaatgtctcaccctctaggcttcccactcttatataactgaaattcttcctagattccagtaaatatactatct-tttgtattcccacagcttcta 182  Q
    ||||||||| || |||||||||||||||| |||||  ||||||| |||||| |||| |||||| ||| |||  || || |||||||||||||||||||||    
T  15660278 ttcttaatgactgaccctctaggcttccctctcttcaataactgcaattctgcctaaattccaataattattataactgtttgtattcccacagcttcta 15660179  T

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Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 34624220 - 34624350
Alignment:
Q  3 aaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccctc 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| |||||||||    
T  34624220 aaccatagttcagagaactcctaccagagctaagctcctagaccagagacaacttttctcctaaacaactctt-acaaactttcttaatgcctcaccctc 34624318  T
Q  103 taggcttcccactcttatataactgaaattct 134  Q
    |||||||||| ||||| ||||||| |||||||    
T  34624319 taggcttccctctcttttataactaaaattct 34624350  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 20039634 - 20039505
Alignment:
Q  1 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||||  |||  ||||||    
T  20039634 taaaccagagtttagagaactcctaccagagctaagctcctagaccagaaagaacttctctcctagacaactcttactaaattttctgtatgcatcaccc 20039535  T
Q  101 tctaggcttcccactcttatataactgaaa 130  Q
    |||||||||| | ||||| |||||||||||    
T  20039534 tctaggcttctctctcttttataactgaaa 20039505  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 29403640 - 29403769
Alignment:
Q  1 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccc 100  Q
    |||||||| |||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||  ||||||    
T  29403640 taaaccagggttcagagaacttctacccgagccaagctccaagaccagagagaacttctctcctaaacaactcttaataaactttctgaatgaatcaccc 29403739  T
Q  101 tctaggcttcccactcttatataactgaaa 130  Q
    ||||| ||||||  |||| |||||||||||    
T  29403740 tctagacttccctatcttttataactgaaa 29403769  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 29403830 - 29403900
Alignment:
Q  84 ttcttaatgtctcaccctctaggcttcccactcttatataactgaaattcttcctagattccagtaaatat 154  Q
    ||||||||| || |||||| ||||||||| |||||  |||||||||| ||||||||||||||| |||||||    
T  29403830 ttcttaatgactaaccctcaaggcttccctctctttaataactgaaactcttcctagattccaataaatat 29403900  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 20039499 - 20039431
Alignment:
Q  84 ttcttaatgtctcaccctctaggcttcccactcttatataactgaaattcttcctagattccagtaaat 152  Q
    ||||||||| || |||||||||||||||  |||||  |||||||||| ||||||||||||||| |||||    
T  20039499 ttcttaatgactaaccctctaggcttccttctcttgaataactgaaactcttcctagattccaataaat 20039431  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 20293209 - 20293343
Alignment:
Q  1 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||| |||| ||| |||    
T  20293209 taaaccagagttcagagaactcctaccagagctaagctcctatacaagagagaacttctctcctaaacaactcttagcaaactttctgaatgcctccccc 20293308  T
Q  101 tcta-ggcttcccactcttatataactgaaattct 134  Q
    |||| ||||| || ||| | |||||||||||||||    
T  20293309 tctagggctttcctctcctctataactgaaattct 20293343  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 21079840 - 21079974
Alignment:
Q  1 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||| |||| ||| |||    
T  21079840 taaaccagagttcagagaactcctaccagagctaagctcctatacaagagagaacttctctcctaaacaactcttagcaaactttctgaatgcctccccc 21079939  T
Q  101 tcta-ggcttcccactcttatataactgaaattct 134  Q
    |||| ||||| || ||| | |||||||||||||||    
T  21079940 tctagggctttcctctcctctataactgaaattct 21079974  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 13955763 - 13955888
Alignment:
Q  3 aaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccctc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||| || | ||||    
T  13955763 aaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactctt-agcaactttctgaatgcctta-cctc 13955860  T
Q  103 taggcttcccactcttatataactgaaa 130  Q
    ||| || ||| ||||| |||||||||||    
T  13955861 tagactcccccctcttttataactgaaa 13955888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 2108287 - 2108409
Alignment:
Q  3 aaccagagttcagagaactccta-ccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccct 101  Q
    |||||||||||   ||||||||| ||||||||| |||||||||||||||| || |||||||||||  ||||||||||| ||||||  |||| ||||| |     
T  2108287 aaccagagttctatgaactcctaaccagagctaggctcctagaccagagaaaatttctctcctaacaaactcttaaaatactttcccaatgactcactca 2108386  T
Q  102 ctaggcttcccactcttatataa 124  Q
    ||||||||||| ||||| |||||    
T  2108387 ctaggcttccctctcttctataa 2108409  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 29355339 - 29355460
Alignment:
Q  4 accagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccctct 103  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |||| || || ||||    
T  29355339 accagagctcagagaactcctaccagagctaagctcctagaccagatagaacttctctcctaaacaactcttaacaaactttatgaatgccttactctct 29355438  T
Q  104 aggcttcccactcttatataac 125  Q
    |||||| || ||||| ||||||    
T  29355439 aggctttcctctcttttataac 29355460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 19058858 - 19058986
Alignment:
Q  1 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccc 100  Q
    ||||||||||   ||||||||||||||||||||| ||||||||||||||||   ||| ||||||||||||||||||| |||||| ||||| |  ||||||    
T  19058858 taaaccagagggaagagaactcctaccagagctaggctcctagaccagaga---cttatctcctaaacaactcttaacaaacttccttaacgattcaccc 19058954  T
Q  101 tctaggcttcccactcttatataactgaaatt 132  Q
    |||||||||||  ||||| | |||||||||||    
T  19058955 tctaggcttccgtctcttttttaactgaaatt 19058986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 19058990 - 19059060
Alignment:
Q  84 ttcttaatgtctcaccctctaggcttcccactcttatataactgaaattcttcctagattccagtaaatat 154  Q
    ||||||||| ||  ||||||||| ||||  |||||  |||||||||||||||||||||||||||| |||||    
T  19058990 ttcttaatgactagccctctaggattccttctctttaataactgaaattcttcctagattccagtgaatat 19059060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7492211 - 7492158
Alignment:
Q  1 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaa 54  Q
    ||||| ||| |||||||||  |||||||||||||||||| ||||||||||||||    
T  7492211 taaactagaattcagagaatacctaccagagctaagctcgtagaccagagagaa 7492158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 23219000 - 23219105
Alignment:
Q  1 taaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||| |||| ||||  |    
T  23219000 taaaccagagttcagagaactcctaccagagctaagctcctagatcagagagaacttctctcctaaacaactcatgacaaactttctgaatgcctcattc 23219099  T
Q  101 tctagg 106  Q
    ||||||    
T  23219100 tctagg 23219105  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44672768 - 44672821
Alignment:
Q  1 taaaccagagttcagagaactccta-ccagagctaagctcctagaccagagaga 53  Q
    |||||||||||||   ||||||||| ||||||||| ||||||||||||||||||    
T  44672768 taaaccagagttctatgaactcctaaccagagctatgctcctagaccagagaga 44672821  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 28914400 - 28914472
Alignment:
Q  58 ctctcctaaacaactcttaaaaaactttcttaatgtctcaccctctaggcttcccactcttatataactgaaa 130  Q
    ||||| ||||||| |||||| ||| ||||| ||||  |||||||||||||||||| |||||||||||||||||    
T  28914400 ctctcttaaacaattcttaataaagtttctgaatgaatcaccctctaggcttccctctcttatataactgaaa 28914472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 5006 - 5053
Alignment:
Q  19 actcctaccagagctaagctcctagaccagagagaacttctctcctaa 66  Q
    |||||||||||||||| |||||||||| ||||||||| ||||| ||||    
T  5006 actcctaccagagctaggctcctagactagagagaacatctctgctaa 5053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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