View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18648_low_2 (Length: 757)
Name: NF18648_low_2
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18648_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 17 - 711
Target Start/End: Complemental strand, 25107286 - 25106592
Alignment:
| Q |
17 |
atttataattttttgaagtgtcttatttcttagcacaacaacaagaacaaccaagcctaatccaaacagacaggcttagttaactggattaagagatgcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25107286 |
atttataattttttgaagtgtcttatttcttagcacaacaacaagaacaaccaagcctaatccaaacagacaggcttagttaactggattaagagatgcc |
25107187 |
T |
|
| Q |
117 |
tttggactcgatcnnnnnnnnnnnntgccaatgattcaacaagaattttgccttcctgtgttatgttacaaaaatattaatgcagtttgtttagccatac |
216 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25107186 |
tttggactcgatcaaaatataaaaatgccaatgattcaaaaagaattttgccttccagtgttatgttacaaaaatattaatgcagtttgtttagccatat |
25107087 |
T |
|
| Q |
217 |
taagcatataccaacttatgcaataatcaagtcacgcgataaatatctactcaatctaaaagtgaaccaagtaataatcacctcttatacagctctccca |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25107086 |
taagcatataccaacttatgcaataatcaagtcacacgataaatatctactcaatctaaaagtgaaccaagtaataatcacctcttatacagctctccca |
25106987 |
T |
|
| Q |
317 |
ttcagttcttagagcatctggtatatgatcaaaccaaattccatcaagttctttcaaaaagtgagcacgagactgatcatatgaagtctgccaatggaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25106986 |
ttcagttcttagagcatctggtatatgatcaaaccaaattccatcaagttctttcaaaaagtgagcacgagactgatcatatgaagtctgccaatggaaa |
25106887 |
T |
|
| Q |
417 |
ctagaaactataaaactttagaaactgagtacataaatacaatttgacatttacaagtaataatgtcatggataaatcaatcatatattcctatagcatg |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25106886 |
ctagaaactataaaactttagaaactgagtacataaatacaatttgacatttacaagtaataatgtcatcgataaatcaatcatatattcctatagcatg |
25106787 |
T |
|
| Q |
517 |
tataattgtatatcatataaaaaactaaaggcgtaacaattcaaccatataaaggaataatccttatgcagattaaaacactcatcatgtaccaccacaa |
616 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25106786 |
tataattgtatatcatataaaaaactaaaggtgtaacaattcaaccatataaaggaataatccttatgcagattaaaacactcatcatgtaccaccacaa |
25106687 |
T |
|
| Q |
617 |
tctagtaacaaatcaagatattgactgtaattaactttcatttctttctttgattccataatatgtttcttagatccctttagatagacaacgta |
711 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25106686 |
tctagtaacagatcaagatattgactgtaattaactttcattgctttctttgattccataatatgtttcttagatccctttagatagacaacgta |
25106592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 712 - 742
Target Start/End: Complemental strand, 25106487 - 25106457
Alignment:
| Q |
712 |
tccactgatcagtttcaaattggtaccacag |
742 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25106487 |
tccactgatcagtttcaaattggtaccacag |
25106457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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