View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18648_low_23 (Length: 215)
Name: NF18648_low_23
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18648_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 56312094 - 56311922
Alignment:
| Q |
19 |
ataaataaatatataccaggaagttcccaagggtcatagcgataaagatcgagaaaagtaataagctcaacgttgaaacgttttccctcgaccttacggc |
118 |
Q |
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| T |
56312094 |
ataaataaatatataccaggaagttcccaagggtcatagcgataaagatcgagaaaagtaataagctcaacgttgaaacgttttccctcgaccttacggc |
56311995 |
T |
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| Q |
119 |
gaaggtagaactctacaagttcttcttcagttggatggaaacgaaaccctggcataaccacgtcatgctcgtg |
191 |
Q |
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| T |
56311994 |
gaaggtagaactctacaagttcttcttcagttggatggaaacgaaaccctggcataaccacgtcatgctcgtg |
56311922 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 8449761 - 8449724
Alignment:
| Q |
133 |
acaagttcttcttcagttggatggaaacgaaaccctgg |
170 |
Q |
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| T |
8449761 |
acaagttcttcatcagttgggtggaaacgaaaccctgg |
8449724 |
T |
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