View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18648_low_24 (Length: 211)
Name: NF18648_low_24
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18648_low_24 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 47782317 - 47782153
Alignment:
| Q |
47 |
agcaatagattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactactttgttgagaa |
146 |
Q |
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| T |
47782317 |
agcaatagattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactactttgttgagaa |
47782218 |
T |
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| Q |
147 |
ggtgattgattattactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatt |
211 |
Q |
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| T |
47782217 |
ggtgattgattattactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatt |
47782153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 47788504 - 47788415
Alignment:
| Q |
47 |
agcaatagattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactact |
136 |
Q |
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| T |
47788504 |
agcaatggattgaagcaaacaatcatcacactgtggaccagacaagtcaggagtacactgaacaagaccatatattgtttgatcactact |
47788415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 47811819 - 47811730
Alignment:
| Q |
47 |
agcaatagattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactact |
136 |
Q |
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| T |
47811819 |
agcaatagattcattcaaacagtcatcacactgtgaaaccgacaaatcaggtgtacactgaacaagaccatttattgtttgatcactact |
47811730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 47778356 - 47778303
Alignment:
| Q |
73 |
cacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgttt |
126 |
Q |
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| T |
47778356 |
cacattgtggaccagataaatcaggtgtacactgagcaagaccatatatagttt |
47778303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 47745591 - 47745632
Alignment:
| Q |
87 |
gacaagtcaggtgtacactgaacaagaccatatattgtttca |
128 |
Q |
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| T |
47745591 |
gacaagtcaggtgtacactgcacaagaccatatatggtttca |
47745632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 47788418 - 47788367
Alignment:
| Q |
160 |
tactaggacccggcgatgttccaacaacatacttactatgtgagtcaccatt |
211 |
Q |
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| T |
47788418 |
tactaggacccggcatttttcccacaacatacttacgatgtgagtcaccatt |
47788367 |
T |
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