View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18648_low_4 (Length: 535)
Name: NF18648_low_4
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18648_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 3789834 - 3790360
Alignment:
| Q |
1 |
atttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatgaagtattctat--gttaatctcaacctcagctcgaaattatgtta |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
3789834 |
atttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatgaagtattctatatgttaatctcaacctaagctcgaaattatgtta |
3789933 |
T |
|
| Q |
99 |
tatcggaaattagtaacaaaagagtatagaaacatatatcgcaaacaatggaacatgatcaattgtttatgcaattcagccacgtgtatgcctaccactg |
198 |
Q |
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||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3789934 |
catcagaaattagtaacaaaagagtatagaaacatatatcacaaacaatggaacatgatcaattctttatgcaattcagccacgtgtatgcctaccactg |
3790033 |
T |
|
| Q |
199 |
cgactaaagagtagcagtagtttgatatactacttgagtgagttaaggtttacaatattacaagtcatatgtata----gtactacgatcaacgtttcaa |
294 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
3790034 |
cgactaaagagtagcagtagttcgatatactacttgagtgagttaaggtttacaatattacaagtcatatgtatatatggtactacgatccacgtttcaa |
3790133 |
T |
|
| Q |
295 |
caatatctctaaagttgaagggagcttcgcaatgccatgctagatgatcaccttcctcgcccttcccctcgtatgtgtctatgagtagtcatactcaaca |
394 |
Q |
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| T |
3790134 |
caatagatctaaagttgaagggagcttcgcaatgccatgctagatgatcaccttcctcttccttcccctcttatgtgtctatgagtagtcatactcaaca |
3790233 |
T |
|
| Q |
395 |
aattaattgaaaacaaattagaataatcataagcgagataagttttaattgagatgatgagtttannnnnnncttgttgagaaatatgactatttgctcc |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3790234 |
aattaattgaaaacaaattagaataatcataagcgagataagttctaattgagatgatgagtttattttttccttgttgagaaatatgactatttgctcc |
3790333 |
T |
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| Q |
495 |
tattcctacaattctattgagatgatg |
521 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
3790334 |
tattcctacaattctattgagatgatg |
3790360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3800270 - 3800173
Alignment:
| Q |
1 |
atttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatgaagtattctatgttaatctcaacctcagctcgaaattatgtta |
98 |
Q |
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||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||| |||| ||||| | ||||||| ||||||||||||||||| |
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| T |
3800270 |
atttgaatttcttgttttttggttggatttcctgcaatgccaaaacgagatcatgaaatatttgatgttgaactcaaccaaagctcgaaattatgtta |
3800173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 34940260 - 34940209
Alignment:
| Q |
230 |
acttgagtgagttaaggtttacaatattacaagtcatatgtatagtactacg |
281 |
Q |
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|||||||||| ||||||||||||| ||||||| ||||| |||||||||||| |
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|
| T |
34940260 |
acttgagtgaattaaggtttacaaagttacaagccatatatatagtactacg |
34940209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 8808196 - 8808245
Alignment:
| Q |
224 |
tatactacttgagtgagttaaggtttacaatattacaagtcatatgtata |
273 |
Q |
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|||| ||||||||||||||| |||||||| | ||||||||||||| |||| |
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| T |
8808196 |
tatattacttgagtgagttagggtttacattgttacaagtcatatatata |
8808245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 38970131 - 38970059
Alignment:
| Q |
223 |
atatactacttgagtgagttaaggtttacaatattacaagtcatatgtatagtactacgatcaacgtttcaac |
295 |
Q |
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||||| ||||||||||| ||| |||||||| | ||||||| |||| |||||||||||| |||| ||| |||| |
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| T |
38970131 |
atatattacttgagtgaattagggtttacagtgttacaagccatagatatagtactacgttcaaagttacaac |
38970059 |
T |
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