View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18648_low_6 (Length: 427)
Name: NF18648_low_6
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18648_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 30001382 - 30000990
Alignment:
| Q |
18 |
aacacatctgaaattctccacaaacttctaaaagactcatatttctttaagaataacataacaatcaaacttgaaacttatatcttccaagttccaatat |
117 |
Q |
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| T |
30001382 |
aacacatctgaaattctccgcaaacttctaaaagactcatatttctttaagaataacataacaatcaaacttgaaact-atatcttccaagttccaatat |
30001284 |
T |
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| Q |
118 |
cctcaacctaaagtcaatgtgcttaaaatgaacaaagtaactcacccagtatctgtatgccacaatttcagctggtgtattatcaggatcacaagacccc |
217 |
Q |
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| T |
30001283 |
cctcaacctaaagtcaatgtgcttaaaatgaacaaagtaactcacccagtatctgtatgccacaatttcagctggtgtattatcaggatcacaagacccc |
30001184 |
T |
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| Q |
218 |
aaactaatctgcttcacagcttcaatctgcacagcttcaggatcctcctttgcactcaactccaaagccaattttaattgatactcttcctccacttcat |
317 |
Q |
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| T |
30001183 |
aaactaatctgcttcacagcttcaatctgcacagcttcaggatcctcctttgcactcaactccaaagccaattttaattgatactcttcctccacttcat |
30001084 |
T |
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| Q |
318 |
gatcccttgaaccaattgcacaacaacctgtatcacgcctatccgaatccgaaacaacatccaaaccaacatttctcacaatatcagatgattc |
411 |
Q |
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| T |
30001083 |
gatcccttgaaccaattgcacaacaacccgtatcatgtctatccgaatccgaaacaacatccaaaccaacatttctcacaatatcagatgattc |
30000990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 329
Target Start/End: Complemental strand, 45199361 - 45199193
Alignment:
| Q |
161 |
acccagtatctgtatgccacaatttcagctggtgtattatcaggatcacaagaccccaaactaatctgcttcacagcttcaatctgcacagcttcaggat |
260 |
Q |
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|||||||||| |||||| |||| ||||||||||||||||||||| | |||||| |||||||| || ||||| |||||||||||||| ||||| || |||| |
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| T |
45199361 |
acccagtatcggtatgcgacaacttcagctggtgtattatcagggtgacaagatcccaaactgatttgcttaacagcttcaatctgtacagcctcgggat |
45199262 |
T |
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| Q |
261 |
cctcctttgcactcaactccaaagccaattttaattgatactcttcctccacttcatgatcccttgaac |
329 |
Q |
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||||||||||||||| ||| ||||| | | | |||||| ||||| ||||||||| |||||||||||| |
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| T |
45199261 |
cctcctttgcactcagctctaaagcaagctgaatttgatattcttcttccacttcaggatcccttgaac |
45199193 |
T |
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