View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18648_low_9 (Length: 376)
Name: NF18648_low_9
Description: NF18648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18648_low_9 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 45409723 - 45410098
Alignment:
| Q |
1 |
tggatgagttttactttgttttctttgcaatagttttgaaccagattagattaatgttattaattgagaccgctgagccgatatcgtaggtttaagcttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45409723 |
tggatgagttttactttgttttctttgcaatagttttgaaccatattagattaatgttattaattgagaccgctgagccgatatcgtaggtttaagcttt |
45409822 |
T |
|
| Q |
101 |
taattttggtgcaacattaatatcagtactagttgtaccaattatgaactattaatagtatagcttcaaccgacccccacctactaattttgacttaata |
200 |
Q |
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| T |
45409823 |
taattttggtgcaacattaatatgagtactagtagtaccaattatgaactattaatagtatagcttcaaccgacccccacctactaattttgacttaata |
45409922 |
T |
|
| Q |
201 |
caatgttgcattggatgcaggtaacacatttcaaatgcggaggagtatcgttaggcgttggtatgcaacatcatgtagcagatggagcatctggtcttca |
300 |
Q |
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| T |
45409923 |
caatgttgctttgcatgcaggtaacacatttcaaatgcggaggagtatcgttaggcgttggtatgcaacatcatgtagcagatggagcatctggtcttca |
45410022 |
T |
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| Q |
301 |
cttcatcaattcatggtcagatgtagctcgtggccttgatgtttccatcccaccgttcattggccgaacactactc |
376 |
Q |
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| T |
45410023 |
cttcatcaattcatggtcagatgtagctcgtggccttgatgtttccatcccaccgttcattggccgaacactactc |
45410098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 27357436 - 27357065
Alignment:
| Q |
1 |
tggatgagttttactttgttttctttgcaatagttttgaaccagattagattaatgttattaattgagaccgctgagccgatatcgtaggtttaagcttt |
100 |
Q |
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| T |
27357436 |
tggatgagttt-actttgttttctttgcaatagttttgaaccagattagattaatgttattaattgataccgctgagccgatatcgtaggtttaagcttt |
27357338 |
T |
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| Q |
101 |
taattttggtgcaacattaatatcagtactagttgtaccaattatgaactattaatagtatagcttcaaccgac-ccccacctactaattttgacttaat |
199 |
Q |
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| T |
27357337 |
taattttggtgcaacattaatatcagtactagtagtaccaattatgaactatt----gtaccccataaattaataccccacctactaattttgacttaat |
27357242 |
T |
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| Q |
200 |
acaatgttgcattggatgcaggtaacacatttcaaatgcggaggagtatcgttaggcgttggtatgcaacatcatgtagcagatggagcatctggtcttc |
299 |
Q |
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| T |
27357241 |
acaatgctgcattgcatgcaggtaacacatttcaaatgcggaggagtatcgttaggcgttggtatgcaacatcatgtagcagatggagcatctggtcttc |
27357142 |
T |
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| Q |
300 |
acttcatcaattcatggtcagatgtagctcgtggccttgatgtttccatcccaccgttcattggccgaacactactc |
376 |
Q |
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| T |
27357141 |
acttcatcaattcatggtcagatgtagctcgtggccttgatgtttccatcccaccgttcattggccgaacactactc |
27357065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 215 - 376
Target Start/End: Original strand, 1129907 - 1130068
Alignment:
| Q |
215 |
atgcaggtaacacatttcaaatgcggaggagtatcgttaggcgttggtatgcaacatcatgtagcagatggagcatctggtcttcacttcatcaattcat |
314 |
Q |
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|||||||||||| |||||||||| |||||||| || | || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |
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| T |
1129907 |
atgcaggtaacatatttcaaatgtggaggagtctcacttggtgttggtatgcaacatcatgtagcagatggagcttctggtcttcatttcatcaatacat |
1130006 |
T |
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| Q |
315 |
ggtcagatgtagctcgtggccttgatgtttccatcccaccgttcattggccgaacactactc |
376 |
Q |
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| T |
1130007 |
ggtcagatgtagctcgtggcctagacgtttccatgccaccattcattgaccggacactactc |
1130068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 1109394 - 1109480
Alignment:
| Q |
276 |
tagcagatggagcatctggtcttcacttcatcaattcatggtcagatgtagctcgtggccttgatgtttccatcccaccgttcattg |
362 |
Q |
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||||||||||| | ||||||||||||||||||||| ||||| ||||||| |||||||||| ||||||||||| ||||| ||||||| |
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| T |
1109394 |
tagcagatggaacttctggtcttcacttcatcaatatatggttagatgtaactcgtggcctagatgtttccattccaccattcattg |
1109480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 216 - 376
Target Start/End: Complemental strand, 31965954 - 31965794
Alignment:
| Q |
216 |
tgcaggtaacacatttcaaatgcggaggagtatcgttaggcgttggtatgcaacatcatgtagcagatggagcatctggtcttcacttcatcaattcatg |
315 |
Q |
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||||||||||| | |||||||| |||||||| || | || ||||| ||||| ||| ||||||| |||||||| |||| | |||||||||||||| |||| |
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| T |
31965954 |
tgcaggtaacatacttcaaatgtggaggagtctcacttggtgttgggatgcaccattatgtagccgatggagcttctgcttttcacttcatcaatacatg |
31965855 |
T |
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| Q |
316 |
gtcagatgtagctcgtggccttgatgtttccatcccaccgttcattggccgaacactactc |
376 |
Q |
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|||||||||| ||||||| || |||| |||||||||||| || |||| || ||||||||| |
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| T |
31965854 |
gtcagatgtaactcgtggtctagatgcttccatcccaccatttattgatcggacactactc |
31965794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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