View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_10 (Length: 447)
Name: NF18649_high_10
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 29386101 - 29386524
Alignment:
| Q |
18 |
gtattgggtaacccgggttcaaatacaatccacaattggttcaaaattgagaagtatgaggatgcttataagttggtctattgtcccaatgtgtgccctt |
117 |
Q |
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| T |
29386101 |
gtattgggtaacccaggttctaatacaatccacaattggttccaaattgagaagtatgaggatgcttataagttggtctattgtcccaatgtgtgccctt |
29386200 |
T |
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| Q |
118 |
cttgcaaacatgtatgcaaagatattggaatttatgtgtataagactagggaaatgcgtttggctctcactaatgttccctttaaagtcaagttccaaaa |
217 |
Q |
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| T |
29386201 |
cttgcaaacatgtatgcaaagatattggaatttatgtgtataagtatagggaaatgcgtttggctctcaccaatgttccctttaaagtaaagttccaaaa |
29386300 |
T |
|
| Q |
218 |
ggcttgatcgaagttaagctttttcaatggcaacaaagtacaagtgtgtttataacttataaggattattaagttttattttccttgttaagaataaaaa |
317 |
Q |
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| T |
29386301 |
ggcttgatcgaagttaagctttttcaatggcaacaaagtacaagtgtgtttataacttataaggattattaagttttattttccttgttaagaataaaaa |
29386400 |
T |
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| Q |
318 |
tatatgaatgaatnnnnnnnnnttctaatctatacttttctcattgtatatatat------agagagcatgtcctttgtttaagaatacattgtatttgc |
411 |
Q |
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| T |
29386401 |
tatatgaatgaat-aaaaaaaattctaatctatacttttctcattgtatatatatatagagagagagcatgtcctttgtttaagaatacattgtatttgc |
29386499 |
T |
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| Q |
412 |
taactagtacctcgatcagcttcat |
436 |
Q |
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| T |
29386500 |
taattagtacctcgatcggcttcat |
29386524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 29378772 - 29379007
Alignment:
| Q |
19 |
tattgggtaacccgggttcaaatacaatccacaattggttcaaaattgagaagtatgaggatgcttataagttggtctattgtcccaatgtgtgcccttc |
118 |
Q |
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|||| ||| |||| ||||| ||| ||||||| | ||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| ||||| |
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| T |
29378772 |
tattaggtcacccaggttcgaattcaatccatagttggttcaagattgagaagtatgaagatgcttataagttggtctattgccctaatgtgtgtccttc |
29378871 |
T |
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| Q |
119 |
ttgcaaacatgtatgcaaagatattggaatttatgtgtataagactagggaaatgcgtttggctctcactaatgttccctttaaagtcaagttccaaaag |
218 |
Q |
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|||||| |||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||| || | |
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| T |
29378872 |
ttgcaaccatgtatgcaaagacattggaatttataagtataagaatagggaaatgcgtttggctctcactaatgttcccctcaaaatcaagtttcagcaa |
29378971 |
T |
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| Q |
219 |
gcttgatcgaagttaagctttttcaatggcaacaaa |
254 |
Q |
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| T |
29378972 |
gcttgatcaaaattaagatataccaatggcaacaaa |
29379007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 29339895 - 29339938
Alignment:
| Q |
51 |
aattggttcaaaattgagaagtatgaggatgcttataagttggt |
94 |
Q |
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| T |
29339895 |
aattggttcaagattgagaagtatggtgatgcttataagttggt |
29339938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 29343024 - 29342981
Alignment:
| Q |
51 |
aattggttcaaaattgagaagtatgaggatgcttataagttggt |
94 |
Q |
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| T |
29343024 |
aattggttcaagattgagaagtatggtgatgcttataagttggt |
29342981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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