View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_13 (Length: 433)
Name: NF18649_high_13
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 24066407 - 24066001
Alignment:
| Q |
16 |
ctatttgcaccccttttgtgttaactttgttttgttcaggatttatgcacattaagtctagtttttctttattaatggattttgnnnnnnnnnnnctttc |
115 |
Q |
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| T |
24066407 |
ctatttgcaccccttttgtgttaactttgttttgttcaggatttatgcacattaagtctagtttttcattattaatggattttgtttttttttt-ctttc |
24066309 |
T |
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| Q |
116 |
tatttcttaatcaggagcaaaagagtttgataacattggatgagatgttggatgcgtatattagcttgaaagagcataagattatgatggatcaagaaaa |
215 |
Q |
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| T |
24066308 |
tatttcttaatcaggagcaaaagagtttgataacattggatgagatgttggatgcgtatattagcttgaaagagcataagattatgatggatcaagaaaa |
24066209 |
T |
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| Q |
216 |
gtttatgttagcacaagagaaaaatcaagttcagaatttacttcaaggtctgcatgatgtcatgaccacttacaatgccagtggaaacattccttcaact |
315 |
Q |
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| T |
24066208 |
gtttatgttagcacaagagaaaaatcaagttcagaatttacttcaaggtctgcatgatgtcatgactacttacaatgccagtggaaaccttccttcaact |
24066109 |
T |
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| Q |
316 |
tcagcaaaatttgctctcgcactcgttcctcaatcggtcgttagtaacaaatctcagccaggtacaatccttcatccacaatctagttttatatatgcag |
415 |
Q |
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| T |
24066108 |
tctgcaaaatttgctctcgcactcgttcctcaatcggtcgttagtaacaaatctcagccaggtacaatccttcatccacaatctagttttatatatgcag |
24066009 |
T |
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| Q |
416 |
ttcctatg |
423 |
Q |
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| T |
24066008 |
ttcctatg |
24066001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 24067033 - 24066929
Alignment:
| Q |
136 |
aagagtttgataacattggatgagatgttggatgcgtatattagcttgaaagagcataagattatgatggatcaagaaaagtttatgttagcacaagaga |
235 |
Q |
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|||| |||||| |||||||||||||| || ||| |||||| ||| ||||| | |||||| | | ||||||||||||| |||||| ||| |||||||| |
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| T |
24067033 |
aagaatttgatgacattggatgagatattatatgagtatatcagcctgaaaaatcataaggtgacaatggatcaagaaatgtttatcatagaacaagaga |
24066934 |
T |
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| Q |
236 |
aaaat |
240 |
Q |
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||||| |
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| T |
24066933 |
aaaat |
24066929 |
T |
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