View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_15 (Length: 427)
Name: NF18649_high_15
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Original strand, 14550519 - 14550917
Alignment:
| Q |
13 |
aatataaatgacaaattacaattacaagttcttggatctccaaaataacttggactcatcagaaacaaggaatgaaaaccttgggagctgtataataata |
112 |
Q |
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| T |
14550519 |
aatataaatgacaaattacaattacaagttcttggatctccaaaataacttggactcatcagaaacaaggaatgaaaaccttgggagctgtataataata |
14550618 |
T |
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| Q |
113 |
ataatgcagtttggtagcattatatatttaactaatgggaggaggaagtgattctgatgaatactgaaaactgattatagaaccttttacaaaacaatcc |
212 |
Q |
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| T |
14550619 |
ataatgcagtttggtagcattatatatttaactaataggaggaggaagtgattctgatgaatactgaaaactgattatagaaccttttacaaaacaatcc |
14550718 |
T |
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| Q |
213 |
cgtgtagaacgggtgatatacaagattattaaaactttcacatgcactcccggaatttaagctgttttctacagcagctttttcgtttgaaagaacgttc |
312 |
Q |
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| T |
14550719 |
cgtgtagaacgggtgatatacaagattattaaaactttcacatgcactcccggaatttaagctgttttctacagcagctttttcgtttgaaagaacgttc |
14550818 |
T |
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| Q |
313 |
aatgccatgaatatctt-nnnnnnnacgcactctgccttaccctgtcctagtgctttgttttgttattgttcactatgagcttctgctattaaccttta |
410 |
Q |
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| T |
14550819 |
aatgccatgaatatcttccccccccacgcactctgccttaccctgtcttagtgctttgttttgttattgttcactatgagcttctgctattaaccttta |
14550917 |
T |
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