View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_16 (Length: 417)
Name: NF18649_high_16
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 42897534 - 42897145
Alignment:
| Q |
13 |
aatatgtaaaaatgggagaccgaaaactagaaatagatagaccaaaatcatatttcagctaaatagagcggtcaaaattgagtagttttcacaaaaaagt |
112 |
Q |
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| T |
42897534 |
aatatgtaaaaatgggagaccaaaaattagaaatagatagaccaaaatcatatttcagctaaatagagcggtcaaaattgagtagttttcacaaaaaagt |
42897435 |
T |
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| Q |
113 |
cattcaaacacatttattagtattcagttttgtgcgtttatttcttcttttatccattcacgattttaatttggatggtttgaataagaacacccataaa |
212 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
42897434 |
cattcaaacacattcattagtattcagttttgtgcgtttatttcttcttttatccattcacgattttaatttggatggtttcaataagaacacccctaaa |
42897335 |
T |
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| Q |
213 |
ttgtgaaattgatggcttgtggtgagctcagctgatgatttgtgtgaagatcaagactatgggaagcaatggcgtatcttatatgcgtgtaacaggctga |
312 |
Q |
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| T |
42897334 |
ttgtgaaattgatggcttgtggtgagctcagctgatgatttgtgtgaagatcaagactatgagaagcaatggcgtatcttatatgcgtgtaacaggctga |
42897235 |
T |
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| Q |
313 |
aaacaaaaaacatattacactgttgcgatcaagggtaaaagcaaaatgctataagtgtaatgatataaggttaaaacaaaatatagtata |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42897234 |
aaacaaaaaacatattacactgttgcgatcaagggtaaaagcaaaatgctataagtgtaatgatataaggttaaaacaaaatatagtata |
42897145 |
T |
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