View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_17 (Length: 414)
Name: NF18649_high_17
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 10593234 - 10592840
Alignment:
| Q |
15 |
tatttctgtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggtttcattttattcaatac |
114 |
Q |
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| T |
10593234 |
tatttcagtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcgtataattaatttcattttattgaatac |
10593135 |
T |
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| Q |
115 |
aaatga-ttttgatgatatttgagactaatttcatgacaaaaagttaccactatatcatgttggtgttggatttactaatgttccacatcagacacaata |
213 |
Q |
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| T |
10593134 |
aaatgatttttgatgatatttgagactaatttcatgacaaaaagttaccattatatca------tgttggatttactaatgttccacatcagacacaata |
10593041 |
T |
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| Q |
214 |
caatataacacta----tataattgtttgcaccgtcaattttaagcagaaagactttggagagactctagattgtctataagaatttacacaatctagag |
309 |
Q |
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| T |
10593040 |
caatataacactatgtttataattgtttgcactgtcaattttaagtag---gaatttggagagactctaggttgtctataagaattt--acaatctagag |
10592946 |
T |
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| Q |
310 |
tcattcaatctttttagtttgggaaaaaatttcttcaaattacat-ttttctattttgtgtactgaagaagaa-gttcgaagtatataataaaaaacatg |
407 |
Q |
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| T |
10592945 |
cccttcaaactttttagtttgggaagaaaattcttcaaattatatgttttttattttgtgtgctgaagaagaaggttcgaagaatcaaataaaaaatatg |
10592846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 38271740 - 38271892
Alignment:
| Q |
23 |
tttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggtttcattttattcaatacaaatgatt |
122 |
Q |
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| T |
38271740 |
tttattttgtcatgtatctttaattctt--tttagactagagttcaccggcattataaggattcatgtaattggttttattttattcaatacaaatgatt |
38271837 |
T |
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| Q |
123 |
ttgatgatatttgagactaatttcatgacaaaaagttaccactatatcatgttgg |
177 |
Q |
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| T |
38271838 |
ttgatgatgtttgagacaaatttcatgacagaaagtgactcctatatcatgttgg |
38271892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 38273423 - 38273573
Alignment:
| Q |
23 |
tttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggtttcattttattcaatacaaatgatt |
122 |
Q |
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| T |
38273423 |
tttattttgtcatgtatctttaattatt--tttagcctagaatgcacagacattatagagattcgtataattggtttcattttattcaatacaaatgatt |
38273520 |
T |
|
| Q |
123 |
ttgatgatatttgagactaatttcatgacaaaaagttaccactatatcatgtt |
175 |
Q |
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| T |
38273521 |
ttggtgatgtttgaggcaaatttcatgacagaacgtgactactatatcatgtt |
38273573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 38277976 - 38278078
Alignment:
| Q |
53 |
tttagactagaatacacggacattgtagggattc----atataattggtttcattttattca--atacaaatgattttgatgatatttgagactaatttc |
146 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||| |
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| T |
38277976 |
tttagactagaatacacggacattatagggattcatatatataatttgtttcattttattcaatatacaaatgattttgatgacgtttgagacaaatttc |
38278075 |
T |
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| Q |
147 |
atg |
149 |
Q |
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||| |
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| T |
38278076 |
atg |
38278078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 38270557 - 38270617
Alignment:
| Q |
117 |
atgattttgatgatatttgagactaatttcatgacaaaaagttaccactatatcatgttgg |
177 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||| ||||| || ||||||||||||||| |
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| T |
38270557 |
atgattttgatgatgtttgagacaaatttcatgacagaaagtgactactatatcatgttgg |
38270617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 38276852 - 38276936
Alignment:
| Q |
11 |
tcactatttctgtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggt |
97 |
Q |
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| T |
38276852 |
tcactatttctttttattttgtcatgtatatttaattatt--tttagatttgaatacatggacattatatggattcatatgattggt |
38276936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 38278971 - 38279052
Alignment:
| Q |
13 |
actatttctgtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattgg |
96 |
Q |
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| T |
38278971 |
actatttctttttattttatcatgtatcttttattatt--tttagaatagaatacaccaacgtcatagggattcatataattgg |
38279052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 26577116 - 26577237
Alignment:
| Q |
18 |
ttctgtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatat--aattggtttcattttattcaataca |
115 |
Q |
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|||| |||||||||||||| |||||||||| || ||||||||| ||||||| |||| || |||||| ||| |||||| ||||||| |||||||||| |
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| T |
26577116 |
ttctttttattttgtcatgcatctttaattatt--tttagactaaaatacacatacatcatatggattcttatttaattggcttcatttgattcaataca |
26577213 |
T |
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| Q |
116 |
aatgattttgatgatatttgagac |
139 |
Q |
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| T |
26577214 |
attgattttgatgatagttgagac |
26577237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32119963 - 32120012
Alignment:
| Q |
1 |
tgtccctctttcactatttctgtttattttgtcatgtatctttaattttt |
50 |
Q |
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| T |
32119963 |
tgtctctctttcactatttctttttattttgtcatgtatctttaattttt |
32120012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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