View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_19 (Length: 370)
Name: NF18649_high_19
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 45058424 - 45058079
Alignment:
| Q |
19 |
gtggttgtgaaaaagaattgtgatgagaaaggagaaagagaaggaaaagaagggcataaatactggagtttgggggaggaagaaacgtggaatgtaaggt |
118 |
Q |
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| T |
45058424 |
gtggttgtgaaaaagaattgtgatgagaaaggagaaagagaaggaaaagaagggcataaatactggagtttgggggaggaagaaacgtggaatgtaaggt |
45058325 |
T |
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| Q |
119 |
aacttggtttgtttgttgtttatagcctaaagccc-actttcttcaactttttgatcacattataattttatcatcttaccctaaattgttctacttctg |
217 |
Q |
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| T |
45058324 |
aacttggtttgtttgttgtttatagcctaaagccccactttcctcaactttttgatcacattataattttatcatcttaccctaaattgttctacttctg |
45058225 |
T |
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| Q |
218 |
actcaacccaccatgcccaaattccatgcatacaattttattatattatcatcaaatcatttatcataaggtcgttacttttcctccnnnnnnnntataa |
317 |
Q |
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| T |
45058224 |
actcaacccaccatgcccaaattccatgcatataattttattatattatcatcaaatcatttatcataaggtcgttacttttcctccaaaaaaaataaaa |
45058125 |
T |
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| Q |
318 |
gtcgttacttttaccatctactattagtcctctattgcctatgctt |
363 |
Q |
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| T |
45058124 |
gtcgttacttttaccatctactattagtcctctattgcccatgctt |
45058079 |
T |
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