View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_28 (Length: 266)
Name: NF18649_high_28
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 37793371 - 37793605
Alignment:
| Q |
21 |
tccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaacc |
120 |
Q |
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| T |
37793371 |
tccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaacc |
37793470 |
T |
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| Q |
121 |
atcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagtgtgaa |
220 |
Q |
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| T |
37793471 |
atcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagtgtgaa |
37793570 |
T |
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| Q |
221 |
catgaatactttagttctgtgtacgatgtagaatt |
255 |
Q |
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| T |
37793571 |
catgaatactttagttctgtgtacgatgtagaatt |
37793605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 37792910 - 37793066
Alignment:
| Q |
28 |
taatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatca |
127 |
Q |
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| T |
37792910 |
taatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgagaacaatatcgatcccaatattacgagtccactatcttcacaaccattttca |
37793009 |
T |
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| Q |
128 |
aatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaat |
184 |
Q |
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| T |
37793010 |
agtggattctcttgcataacaacagaaaatttcgcttccactatatcacatgaaaat |
37793066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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