View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_3 (Length: 563)
Name: NF18649_high_3
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 179 - 546
Target Start/End: Original strand, 37383286 - 37383659
Alignment:
| Q |
179 |
tcatttaccaaatcatgaataaactcttctacaaac------tattggtcttattttcatgaaaactagttta----taaatccacttatcatctccctc |
268 |
Q |
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| T |
37383286 |
tcatttaccaaatcatgaataaactcttctacaaacaaactatattggtcttattttcatgaaaactagtttagaaataaatccacttatcatctccttc |
37383385 |
T |
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| Q |
269 |
ggataaatgttaaaataaactcttttaaatttgtacaacaatcatttacggacatagagacgtgtctggatttaaactcccttaccttacggatcagttg |
368 |
Q |
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| T |
37383386 |
ggataaatgttaaaataaactctttt------gtacaacaatcatttacggacatagagacgtgtctgaatttaaactcccttaccttacggatcagttg |
37383479 |
T |
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| Q |
369 |
taannnnnnnnnnnnnnnnnn---gcatataaagtaaacaa-gaccattttactacatagtcttcaaacaattcaaatgcagaaattattaaagaaatcc |
464 |
Q |
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| T |
37383480 |
taaatcattattattattattattgcacataaagtaaacaaagaccattttactacatagtcttcaaacaattcaaatgtagaaattattaaagaaatcc |
37383579 |
T |
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| Q |
465 |
atttaaaaaacacatacataattgacaccatcttattatcacatacataaaactcataaaataatttcctaatgcaaaaact |
546 |
Q |
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| T |
37383580 |
atttaaaaaacacatacataattgacactatcttattatcacatacataaaactc--aaaataatttcctaatgcaaaaact |
37383659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 37383118 - 37383261
Alignment:
| Q |
10 |
aagaatataatacctcttatttaccaacatagaagacattggagacgtatttcaaacatatgtttcatacatgccttattgttacgagaagtaaatatat |
109 |
Q |
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| T |
37383118 |
aagaatatactacctcttatttaccaacatagaagacattggagacgtatttcaaacatatgtttcatacatgccttattgttatgagaagtaaatatat |
37383217 |
T |
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| Q |
110 |
attccaatataaactcttatgtataacaatcatttaccttttat |
153 |
Q |
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| T |
37383218 |
attccaatataaacccttatgtataacaatcatttaccttttat |
37383261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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