View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_35 (Length: 241)
Name: NF18649_high_35
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_35 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (7 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 17258030 - 17258254
Alignment:
| Q |
18 |
aatgaaatggcaaattgggacggtaccaggttcgactttgagagtttcataaagcaattcagcattcatgcctcttgtatcatggtgacaaactgttaaa |
117 |
Q |
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| T |
17258030 |
aatgaaatggcaaattgggatggtaccaggttcgacttttagagcttcataaagcaactcagcattcatgcctcttgtgtcatggtggcaaacagttaag |
17258129 |
T |
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| Q |
118 |
gccttagctttagttccatcaggggctaccaatgggaccacataagcagtt-ttgcttgcacttggtggcaattgaatacaactttttcgaaattcaatc |
216 |
Q |
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|||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17258130 |
gccttagctttacctccatcgggggctaccaatgataccacataagcagttgttgcttgcacttggtggcaattgaatacaactttttcgaaattcaatc |
17258229 |
T |
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| Q |
217 |
tatgacacatcactgcattgtctcc |
241 |
Q |
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| T |
17258230 |
tatgacacatcactgcattgtctcc |
17258254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 17107642 - 17107422
Alignment:
| Q |
22 |
aaatggcaaattgggacggtaccaggttcgactttgagagtttcataaagcaattcagcattcatgcctcttgtatcatggtgacaaactgttaaagcct |
121 |
Q |
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| T |
17107642 |
aaatggcaaatagggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgcct |
17107543 |
T |
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| Q |
122 |
tagctttagttccatcaggggctaccaatgggaccacataagcagtt-ttgcttgcacttggtggcaattgaatacaactttttcgaaattcaatctatg |
220 |
Q |
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| T |
17107542 |
tagctttagttccatcagaagccaccaatagcaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatg |
17107443 |
T |
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| Q |
221 |
acacatcactgcattgtctcc |
241 |
Q |
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| T |
17107442 |
acacatcactgctttgtctcc |
17107422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 17956430 - 17956494
Alignment:
| Q |
177 |
acttggtggcaattgaatacaactttttcgaaattcaatctatgacacatcactgcattgtctcc |
241 |
Q |
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| T |
17956430 |
acttggtggcaatagaatagaacttttttaaaattcaatctatggcacatcactgcgttgtctcc |
17956494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 17117242 - 17117323
Alignment:
| Q |
76 |
tcagcattcatgcctcttgtatcatggtgacaaactgttaaagccttagctttagttccatcaggggctaccaatgggacca |
157 |
Q |
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| T |
17117242 |
tcaggattcatacctcttgtatcatggtgacaaatagtcactgccttagctttagttccatcagaagccaccaatggcacca |
17117323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 17945272 - 17945496
Alignment:
| Q |
18 |
aatgaaatggcaaattgggacggtaccaggttcgactttgagagtttcataaagcaattcagcattcatgcctcttgtatcatggtgacaaactgttaaa |
117 |
Q |
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| T |
17945272 |
aatgaaatggcaaacagggacagttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagt |
17945371 |
T |
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| Q |
118 |
gccttagctttagttccatcaggggctaccaatgggaccacataagcagtt-ttgcttgcacttggtggcaattgaatacaactttttcgaaattcaatc |
216 |
Q |
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| T |
17945372 |
gccttggatttagttccatcagaggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaacctttttaagattcattc |
17945471 |
T |
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| Q |
217 |
tatgacacatcactgcattgtctcc |
241 |
Q |
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| T |
17945472 |
tatgacacatcactgcgttgtctcc |
17945496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 17004394 - 17004252
Alignment:
| Q |
88 |
cctcttgtatcatggtgacaaactgttaaagccttagctttagttccatcaggggctaccaatgggaccacataagcagtt-ttgcttgcacttggtggc |
186 |
Q |
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| T |
17004394 |
cctcttgtatcatggtggcagacagttagtgccttagctttggttccatctaaagccaccaatggcaccatgtaagttgtagttgcattaacttggtgac |
17004295 |
T |
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| Q |
187 |
aattgaatacaactttttcgaaattcaatctatgacacatcac |
229 |
Q |
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||| |||||||| |||| |||||| ||||||||||||||||| |
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| T |
17004294 |
aataaaatacaacatttttgaaatttaatctatgacacatcac |
17004252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 17986465 - 17986553
Alignment:
| Q |
51 |
gactttgagagtttcataaagcaattcagcattcatgcctcttgtatcatggtgacaaactgttaaagccttagctttagttccatcag |
139 |
Q |
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| T |
17986465 |
gactttgagaacttcataaagcacatcaggatccatacctctcgtgtcatggtggcatattgttagtgccttcgctttagttccatcag |
17986553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 17986592 - 17986656
Alignment:
| Q |
177 |
acttggtggcaattgaatacaactttttcgaaattcaatctatgacacatcactgcattgtctcc |
241 |
Q |
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||||||||||||| |||||||||| |||||||| | | ||||||||||||| || |||||||| |
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| T |
17986592 |
acttggtggcaataaaatacaacttgatcgaaatttagtttatgacacatcacggctttgtctcc |
17986656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 34241474 - 34241425
Alignment:
| Q |
192 |
aatacaactttttcgaaattcaatctatgacacatcactgcattgtctcc |
241 |
Q |
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||||||||||||| || ||||| ||||||||||||||||| |||||||| |
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| T |
34241474 |
aatacaactttttgaaagttcaacctatgacacatcactgctttgtctcc |
34241425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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