View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18649_high_37 (Length: 239)
Name: NF18649_high_37
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 31437858 - 31438061
Alignment:
| Q |
19 |
cttcgggactcttggaagtcttggtgatggtctgcagaatcctctcatgatgtacattcttagtgatgtgatcaatgcttatggagataagaatagccgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31437858 |
cttcgggactcttggaagtcttggtgatggtctgcagaatcctctcatgatgtacattcttagtgatgtgatcaatgcttatggagataagaatagccgt |
31437957 |
T |
|
| Q |
119 |
ttaaatcaacatgatgtgaacaaggtgagcttgttcaataaaattactactcttttttcatttatgtctaaggagtcgtgaaactttatttatgtcacta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31437958 |
ttaaatcaacatgatgtgaacaaggtgagcttgttcaataaaattactactcttttttcatttatgtctaaggagtcgtgaaactttatttatgtcacaa |
31438057 |
T |
|
| Q |
219 |
tttt |
222 |
Q |
| |
|
|||| |
|
|
| T |
31438058 |
tttt |
31438061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University