View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_4 (Length: 540)
Name: NF18649_high_4
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 15 - 530
Target Start/End: Complemental strand, 40383603 - 40383088
Alignment:
| Q |
15 |
acaaaaagccttgtagagttcaacaagtcatggcagttaaagtataaaccagcatctgtaactgccgttaacggacctaaaatgtcgttaaaagacgcca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383603 |
acaaaaagccttgtagagttcaacaagtcatggcagttaaagtataaaccagcatctgtaactgccgttaacggacctaaaatgtcgttaaaagacgcca |
40383504 |
T |
|
| Q |
115 |
tcagtgccagtatctcaagagggaaattagtctcaggaactaatggtggtaatggaaacggtaactcaattgcgtcctcagttgccacttttgcaaatcc |
214 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383503 |
tcagtgcgagtatctcaagagggaaattagtctcaggaactaacggtggtaatggcaacggtaactcaattgcgtcctcagttgccacttttgcaaatcc |
40383404 |
T |
|
| Q |
215 |
gttttggattgaaatggcagttattggaaaacggtctctactaaactcaagacggatgccggaattattcggaatccgtctcggtgcagttctggttacc |
314 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383403 |
gttttggattgaaatggcggttattggaaaacggtctctactaaactcaagacggatgccggaattattcggaatccgtctcggtgcagttctggttacc |
40383304 |
T |
|
| Q |
315 |
ggaggaatcttggccaccatcttttaccgtcttgacgattcaccaaaaggtgttcaagagcgtttgggtttcttcgcctttgccatgtcaacaaccttct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383303 |
ggaggaatcttggccaccatcttttaccgtcttgacgattcaccaaaaggtgttcaagagcgtttgggtttcttcgcctttgccatgtcaacaaccttct |
40383204 |
T |
|
| Q |
415 |
acacttgtgctgaagctatccccgttttccttcaagagcgttacattttcatgagagaaactgcttacaacgcttaccgtcgttcttcctatgtccttgc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383203 |
acacttgtgctgaagctatccccgttttccttcaagagcgttacattttcatgagagaaactgcttacaacgcttaccgtcgttcttcctatgtccttgc |
40383104 |
T |
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| Q |
515 |
acactccatcatctct |
530 |
Q |
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|||||||||||||||| |
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| T |
40383103 |
acactccatcatctct |
40383088 |
T |
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