View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_5 (Length: 504)
Name: NF18649_high_5
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 10044135 - 10044621
Alignment:
| Q |
1 |
gaagggttgtgaggattttatcaagaaggacaaagaacaatcctgttattataggtgagccaggtgttggtaaaacagctgttgttgaagggttggctaa |
100 |
Q |
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| T |
10044135 |
gaagggttgtgaggattttatcaagaaggacaaagaacaatcctgttattataggtgagccaggtgttggtaaaacagctgttgttgaagggctggctaa |
10044234 |
T |
|
| Q |
101 |
gagaatagttagaggagatgttcctagtaatcttgccgatgttagattatttgctttggatatgggagcgttagtcgctggtactcagtataggggacaa |
200 |
Q |
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| T |
10044235 |
gagaatagttagaggagatgttcctagcaatcttgctgatgttaggttatttgctttggatatgggagcgttagtcgctggtactcagtataggggacaa |
10044334 |
T |
|
| Q |
201 |
tttgaacaaaggttgaaggcagttttgaaagaagtggaagatgctgaagggaaggttattgttttcattgatgaaattcatcttgttctcggtgccggtc |
300 |
Q |
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| T |
10044335 |
tttgaacaaaggttgaaggcagttttgaaagaagtggaagatgctgaagggaaggttattgttttcattgatgaaattcatcttgttctcggtgccggtc |
10044434 |
T |
|
| Q |
301 |
aatgtcaaggatcaatggatgctgctaatcttttgaaacctatgcttgctcgtggccaacttagatgcatcggtgcaacaacacttgatgaatatagaaa |
400 |
Q |
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| T |
10044435 |
aatgtcaaggatcaatggatgctgctaatcttttgaaacctatgcttgctcgtggccaacttagatgcatcggtgcaacaacacttgatgaatatagaaa |
10044534 |
T |
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| Q |
401 |
atatgttgaaaaggatgcagcatttgaaaggaggtttcaacaggttcatgtttctgaacctagtgtgcctgataccattagtattct |
487 |
Q |
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| T |
10044535 |
atatgttgaaaaggatgcagcatttgaaaggaggtttcaacaggttcatgtttctgaacctagtgtgcctgataccattagtattct |
10044621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 45466247 - 45466733
Alignment:
| Q |
1 |
gaagggttgtgaggattttatcaagaaggacaaagaacaatcctgttattataggtgagccaggtgttggtaaaacagctgttgttgaagggttggctaa |
100 |
Q |
| |
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|||| |||||||||||||| ||||| ||||| ||||| ||||| ||| |||| |||||||| |||||||| ||||| ||||||||||||||||||||| | |
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| T |
45466247 |
gaagagttgtgaggattttgtcaaggaggactaagaataatccagttcttattggtgagcctggtgttgggaaaactgctgttgttgaagggttggctca |
45466346 |
T |
|
| Q |
101 |
gagaatagttagaggagatgttcctagtaatcttgccgatgttagattatttgctttggatatgggagcgttagtcgctggtactcagtataggggacaa |
200 |
Q |
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| T |
45466347 |
gaggattgttagaggtgatgttcctagcaatcttgctgatgttaggttaattgctctggatatgggagcattggttgctggtgcgaagtataggggagaa |
45466446 |
T |
|
| Q |
201 |
tttgaacaaaggttgaaggcagttttgaaagaagtggaagatgctgaagggaaggttattgttttcattgatgaaattcatcttgttctcggtgccggtc |
300 |
Q |
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|||||| | ||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||| || || ||| |
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| T |
45466447 |
tttgaagagaggttgaaggctgttttgaaagaagttgaagaagctgaagggaaggttattcttttcattgatgagattcatcttgttcttggagctggta |
45466546 |
T |
|
| Q |
301 |
aatgtcaaggatcaatggatgctgctaatcttttgaaacctatgcttgctcgtggccaacttagatgcatcggtgcaacaacacttgatgaatatagaaa |
400 |
Q |
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| |||||||||||||||||||||||||||| || || |||||||||||||| || ||| |||| || ||||| ||||||||||| || ||||| || |
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| T |
45466547 |
gaacagaaggatcaatggatgctgctaatctttttaagccaatgcttgctcgtggacagcttcgatgtattggtgctacaacacttgaggagtataggaa |
45466646 |
T |
|
| Q |
401 |
atatgttgaaaaggatgcagcatttgaaaggaggtttcaacaggttcatgtttctgaacctagtgtgcctgataccattagtattct |
487 |
Q |
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| T |
45466647 |
gtatgttgaaaaagatgcagcatttgaaagaaggtttcaacaggtttatgtggctgaacctagtgttccggatacgattagtattct |
45466733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 4398411 - 4398310
Alignment:
| Q |
315 |
atggatgctgctaatcttttgaaacctatgcttgctcgtggccaacttagatgcatcggtgcaacaacacttgatgaatatagaaaatatgttgaaaagg |
414 |
Q |
| |
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|||||||||| |||||| || || |||||||||| ||| || |||| ||||||| |||||||||||| | || || ||||| |||||| |||| |||| |
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| T |
4398411 |
atggatgctggtaatctcttaaagcctatgcttggtcgaggggaactgcgatgcattggtgcaacaacattagacgagtataggaaatatattgagaagg |
4398312 |
T |
|
| Q |
415 |
at |
416 |
Q |
| |
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|| |
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| T |
4398311 |
at |
4398310 |
T |
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