View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_high_9 (Length: 460)
Name: NF18649_high_9
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 204 - 442
Target Start/End: Original strand, 3702043 - 3702280
Alignment:
| Q |
204 |
gtgctccttggttttaaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaagatacaaaagatgagttgt |
303 |
Q |
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| T |
3702043 |
gtgctccttggttt-aaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaaggtacaaaagatgagttgt |
3702141 |
T |
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| Q |
304 |
gtgagcaacaatatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgagtaaac |
403 |
Q |
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| T |
3702142 |
gcgagcaacaatatgagaggttcaaacagttggtggtagaagccaagacactgcttggaaaggcatgtcaagatttaggagatgagttgtgtgagtaaac |
3702241 |
T |
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| Q |
404 |
attgtgagaactttgccaccagaaatttgttcaatgatc |
442 |
Q |
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| T |
3702242 |
attgtgagaactttgccaccagaaatttgttcaatgatc |
3702280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 3701904 - 3702042
Alignment:
| Q |
96 |
taactgttcaaaagaaggagcatgtcctgttttcgagtcatcccttgtgcatggtggaaatggcttcgtcgcaggaatggtatgtatagaggatatgcca |
195 |
Q |
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| T |
3701904 |
taactgttcaaaagaagaagcatgtcctgttttcgagtcatcccttgtgcatggtggaaatggcttcgtcgcagcaatggtatgtatagaggatatgcca |
3702003 |
T |
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| Q |
196 |
ggactagagtgctccttggttttaaggttcatgagctac |
234 |
Q |
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| T |
3702004 |
ggactagagtgctccttggttttaaggttcatgagctac |
3702042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 180 - 430
Target Start/End: Original strand, 3713443 - 3713693
Alignment:
| Q |
180 |
tatagaggatatgccaggactagagtgctccttggttttaaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacat |
279 |
Q |
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| T |
3713443 |
tatagtgggtatgcctgtactagagtactcattggtttaaaggatgatgagctacatttatgcggtgatcctagtgttttgcatattgtttgaaagatat |
3713542 |
T |
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| Q |
280 |
atcaagatacaaaagatgagttgtgtgagc---aacaatatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaaga |
376 |
Q |
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| T |
3713543 |
ataaagatacagaagatgagttgtgcgagcaaaaactatatgagagattcaaacagttggtggttgaagcaaagaccctgcttggaaatgtatgttaaga |
3713642 |
T |
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| Q |
377 |
tttacgagatgagttgtgtgagtaaacattgtgagaactttgccaccagaaatt |
430 |
Q |
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| T |
3713643 |
tacaggagatgagttgtgtgag-caacattatgaga--tttgccaccagaaatt |
3713693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 3719951 - 3720018
Alignment:
| Q |
228 |
gagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaagatacaaaaga |
295 |
Q |
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| T |
3719951 |
gagctacatttatgcggtgatcctaatgttttgcatattgttcaaaagacatatcaagatacagaaga |
3720018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 315 - 428
Target Start/End: Original strand, 3716900 - 3717013
Alignment:
| Q |
315 |
tatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgag----taaacattgtga |
410 |
Q |
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| T |
3716900 |
tatgagaggttcaaacagttggtggttgaatccaagaccctgc----aaaggtatgtcaagatacaagaaatgagttgtgtgagcaaattaacattatga |
3716995 |
T |
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| Q |
411 |
gaactttgccaccagaaa |
428 |
Q |
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| T |
3716996 |
gagctttgccaccagaaa |
3717013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 3713301 - 3713350
Alignment:
| Q |
81 |
tttattgaagtctgttaactgttcaaaagaaggagcatgtcctgttttcg |
130 |
Q |
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| T |
3713301 |
tttattgaagtccgttaactggtcaaaagaagaagcatgtcctgttttcg |
3713350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 179 - 364
Target Start/End: Complemental strand, 3520800 - 3520615
Alignment:
| Q |
179 |
gtatagaggatatgccaggactagagtgctccttggttttaaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagaca |
278 |
Q |
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| T |
3520800 |
gtatagaggttatgcatggactagggcgctccttggtttgatggctgacgagatacatttatgcggtgatcctagtgttttggatattgttcgaaagatc |
3520701 |
T |
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| Q |
279 |
tatcaagatacaaaagatgagttgtgtgagcaacaatatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaa |
364 |
Q |
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| T |
3520700 |
tgtcaggaaacaggagatgatttgtatgagcaacattatgagaggttcaaaccgttggtagtcgaagcaaagaccctgcttggaaa |
3520615 |
T |
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