View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_low_14 (Length: 442)
Name: NF18649_low_14
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 17258286 - 17258718
Alignment:
| Q |
1 |
tcctggtttacgccaaaggtacttgaaatcgccttaatctttgacgttccaaaatgtgaattgacatgttcaaccatcgattccaaggatgatacacaat |
100 |
Q |
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| T |
17258286 |
tcctggtttacgccaaaggtacttgaaatcgccttaatctttgacgttccaaaatgtgaaatgacatgttcaaccatcgattccaaggatgatacacaat |
17258385 |
T |
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| Q |
101 |
gtttgcgttctcctgtcgcagttggactgttacaaaagtcgtcaagactttgtctctctttgtttgccagccatatggaatctgtgacaccttgttttgg |
200 |
Q |
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| T |
17258386 |
gtttgcgttctcctgtcgcagttggactgttacaaaagtcgtcaagactttgtctctctttgtttgccagccatatggaatctgtgataccttgtcttgg |
17258485 |
T |
|
| Q |
201 |
ttttccgaatggtcgcactgtctttctaagagaattattgttacctaagatcattttctttccagggtagaggtcatgttcgnnnnnnngtgtcgagtat |
300 |
Q |
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| T |
17258486 |
ttttccgaatggtcgtactgtatttctaagagaattattgttacctaagatcattttctttccagggtagaggtcatgttcgaaaaaaagtgtcgagtat |
17258585 |
T |
|
| Q |
301 |
tggttcaattcttcggttttgataggtagattattagttttgccatctgccaaatcnnnnnnnnnnnnnncaattaatttctaaatcatgacacagtctt |
400 |
Q |
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| T |
17258586 |
tggttcaattcttcggttttgataggtagattatttgttttgccatctgccaaatc------caaaaaaacaattaattcctaaatcatgacacagtctt |
17258679 |
T |
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| Q |
401 |
attattaggagggaccaaaatatataattcatatcactc |
439 |
Q |
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| T |
17258680 |
attattaggaggcagcaaaatatacaattcatattactc |
17258718 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 17986937 - 17986973
Alignment:
| Q |
244 |
cctaagatcattttctttccagggtagaggtcatgtt |
280 |
Q |
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| T |
17986937 |
cctaagctcattttctttccagggtagaggtcatgtt |
17986973 |
T |
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