View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18649_low_22 (Length: 388)

Name: NF18649_low_22
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18649_low_22
NF18649_low_22
[»] chr1 (5 HSPs)
chr1 (1-370)||(12496852-12497218)
chr1 (1-143)||(22855456-22855596)
chr1 (1-138)||(44921053-44921186)
chr1 (214-272)||(48252377-48252435)
chr1 (197-247)||(35120174-35120224)
[»] chr4 (3 HSPs)
chr4 (58-158)||(2857808-2857908)
chr4 (58-156)||(12099778-12099876)
chr4 (214-248)||(13807492-13807526)
[»] chr2 (4 HSPs)
chr2 (29-158)||(36682543-36682671)
chr2 (211-246)||(34099867-34099902)
chr2 (208-250)||(13292786-13292828)
chr2 (211-245)||(43398599-43398633)
[»] chr6 (3 HSPs)
chr6 (60-158)||(8446004-8446103)
chr6 (60-158)||(8454808-8454907)
chr6 (58-156)||(388427-388526)
[»] chr5 (1 HSPs)
chr5 (58-137)||(36830256-36830335)
[»] chr3 (1 HSPs)
chr3 (208-247)||(7558148-7558187)
[»] chr7 (1 HSPs)
chr7 (206-248)||(11895080-11895122)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 12496852 - 12497218
Alignment:
Q  1 aagaagaacgatgaagcgggtgagggaagagaagaggcaacacacacaaaatatagggggatgattttacaaaattgtccttgcaatttaaaggaaatta 100  Q
    |||||||||||||||||| |||     || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12496852 aagaagaacgatgaagcgagtg-----agtgaagaggcaacacacacaaaagatagggggatgattttacaaaattgtccttgcaatttaaaggaaatta 12496946  T
Q  101 caaaaaatctcattggtgtcatttttgtgtcaaaaaatatgtgcacgtttatcatttccgattaaaaaatatgaagacacttgagttgtcatactgttaa 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  12496947 caaaaaatctcattggtgtcatttttgtgtcaaaaaatttgtgcacgtttatcatttccgattaagaaatatgaacacacttgagttgtcataccgttaa 12497046  T
Q  201 ttgtcacgacaatacatcattaaatgcatgtgtaaaataactttacatgatcagtgtacaataattaaactcaataataaagcatgtatgtctatataag 300  Q
    ||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  12497047 ttgtcacgacaatgcatcattaaatgcatgtgtaaagtaactttagatgattagtgtacaataattaaactcaataataaagcatgcatgtctatataag 12497146  T
Q  301 agagaga--ggaatggaacatttatattgtaacattaatataatcatttatgaaaaacatgaaggaaaaatt 370  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12497147 agagagaggggaatgaaacatttatattgtaacattaatataatcatttatgaaaaacatgaaggaaaaatt 12497218  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 22855596 - 22855456
Alignment:
Q  1 aagaagaacgatgaagcgggtgagggaagagaagaggcaacacacacaaaatatagggggatgattttacaaaattgtccttgcaatttaaaggaaatta 100  Q
    |||||| ||||||||| ||||||||| |||||||||| |||| |||||| |   |||   ||||| | |||| |||||||||||| ||||||| ||||||    
T  22855596 aagaaggacgatgaagtgggtgaggggagagaagagggaacagacacaagagggagga--atgatctgacaatattgtccttgcactttaaagaaaatta 22855499  T
Q  101 caaaaaatctcattggtgtcatttttgtgtcaaaaaatatgtg 143  Q
    || |||||  |||||||||||||||||||||||||||| ||||    
T  22855498 cagaaaataccattggtgtcatttttgtgtcaaaaaatgtgtg 22855456  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 44921053 - 44921186
Alignment:
Q  1 aagaagaacgatgaagcgggtgagggaagagaagaggcaacacacacaaaatatagggggatgattttacaaaattgtccttgcaatttaaaggaaatta 100  Q
    |||||||||| ||| | | ||||||| ||||||||||||||| |||| | | |    ||||||||||||||||||| | | |||| ||||||| ||||||    
T  44921053 aagaagaacggtgaggtgagtgaggggagagaagaggcaacaaacacgacaga----gggatgattttacaaaattattcctgcactttaaagaaaatta 44921148  T
Q  101 caaaaaatctcattggtgtcatttttgtgtcaaaaaat 138  Q
    |||||||| |||||||||||  |||||||| |||||||    
T  44921149 caaaaaatgtcattggtgtccattttgtgtaaaaaaat 44921186  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 48252435 - 48252377
Alignment:
Q  214 acatcattaaatgcatgtgtaaaataactttacatgatcagtgtacaataattaaactc 272  Q
    |||||||| |||| ||||||||||| | | ||||||||| |||||||||||||||||||    
T  48252435 acatcattgaatgtatgtgtaaaattattgtacatgatcggtgtacaataattaaactc 48252377  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 35120174 - 35120224
Alignment:
Q  197 ttaattgtcacgacaatacatcattaaatgcatgtgtaaaataactttaca 247  Q
    ||||||| || | ||||||||||||  ||||||||||||||||||||||||    
T  35120174 ttaattgacatggcaatacatcattggatgcatgtgtaaaataactttaca 35120224  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 2857808 - 2857908
Alignment:
Q  58 gggatgattttacaaaattgtccttgcaatttaaaggaaattacaaaaaatctcattggtgtcatttttgtgtcaaaaaatatgtgcacgtttatcattt 157  Q
    |||| ||||| |||||||| |||||||| ||||||||||||||| ||||||  |||||||||| ||||||||||||||||| ||||   |||||||||||    
T  2857808 gggacgatttcacaaaattttccttgcattttaaaggaaattacgaaaaatggcattggtgtcttttttgtgtcaaaaaatctgtgtttgtttatcattt 2857907  T
Q  158 c 158  Q
    |    
T  2857908 c 2857908  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 12099778 - 12099876
Alignment:
Q  58 gggatgattttacaaaattgtccttgcaatttaaaggaaattacaaaaaatctcattggtgtcatttttgtgtcaaaaaatatgtgcacgtttatcatt 156  Q
    |||||||||||||||||||||||||||| |||||||| ||| | |||||||  |||||||||| | ||||||||  ||||| ||||   ||||||||||    
T  12099778 gggatgattttacaaaattgtccttgcactttaaagggaataaaaaaaaataccattggtgtcgtatttgtgtctcaaaatctgtgtttgtttatcatt 12099876  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 13807526 - 13807492
Alignment:
Q  214 acatcattaaatgcatgtgtaaaataactttacat 248  Q
    |||||||| ||||||||||||||||||||||||||    
T  13807526 acatcattgaatgcatgtgtaaaataactttacat 13807492  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 36682671 - 36682543
Alignment:
Q  29 gagaagaggcaacacacacaaaatatagggggatgattttacaaaattgtccttgcaatttaaaggaaattacaaaaaatctcattggtgtcatttttgt 128  Q
    ||||||||||| |||| ||| || | || |||||||||| |||||||| |||||||| |||||| ||||||||||||| |  |||||||||| |||||||    
T  36682671 gagaagaggca-cacaaacacaagagagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaattgccattggtgtcttttttgt 36682573  T
Q  129 gtcaaaaaatatgtgcacgtttatcatttc 158  Q
    |||||||||  ||||   ||||||||||||    
T  36682572 gtcaaaaaacctgtgtttgtttatcatttc 36682543  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 34099867 - 34099902
Alignment:
Q  211 aatacatcattaaatgcatgtgtaaaataactttac 246  Q
    ||||||||||| ||||||||||||||||||||||||    
T  34099867 aatacatcattgaatgcatgtgtaaaataactttac 34099902  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 13292828 - 13292786
Alignment:
Q  208 gacaatacatcattaaatgcatgtgtaaaataactttacatga 250  Q
    |||||||||||||| |||| ||||||||||||| |||||||||    
T  13292828 gacaatacatcattgaatgaatgtgtaaaataattttacatga 13292786  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 43398599 - 43398633
Alignment:
Q  211 aatacatcattaaatgcatgtgtaaaataacttta 245  Q
    ||||||||||||||||| |||||||||||||||||    
T  43398599 aatacatcattaaatgcttgtgtaaaataacttta 43398633  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 8446103 - 8446004
Alignment:
Q  60 gatgattttacaaaattgtccttgcaatttaaaggaaattacaa-aaaatctcattggtgtcatttttgtgtcaaaaaatatgtgcacgtttatcatttc 158  Q
    |||||||||  ||||||||||||||| ||||||||||||||||| ||||| |||||| |||| | ||||||||||||||| ||||   ||||||||||||    
T  8446103 gatgattttctaaaattgtccttgcactttaaaggaaattacaaaaaaatgtcattgatgtcgtatttgtgtcaaaaaatttgtgtttgtttatcatttc 8446004  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 8454907 - 8454808
Alignment:
Q  60 gatgattttacaaaattgtccttgcaatttaaaggaaattacaa-aaaatctcattggtgtcatttttgtgtcaaaaaatatgtgcacgtttatcatttc 158  Q
    |||||||||  ||||||||||||||| ||||||||||||||||| ||||| |||||| |||| | ||||||||||||||| ||||   ||||||||||||    
T  8454907 gatgattttctaaaattgtccttgcactttaaaggaaattacaaaaaaatgtcattgatgtcgtatttgtgtcaaaaaatttgtgtttgtttatcatttc 8454808  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 388526 - 388427
Alignment:
Q  58 gggatgattttacaaaattgtccttgcaatttaaaggaaattacaa-aaaatctcattggtgtcatttttgtgtcaaaaaatatgtgcacgtttatcatt 156  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  |||||||||| | ||||||||  ||||| ||||   ||||||||||    
T  388526 gggatgattttacaaaattgtccttgcactttaaagggaattacaaaaaaataccattggtgtcgtatttgtgtctcaaaatctgtgtttgtttatcatt 388427  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 36830256 - 36830335
Alignment:
Q  58 gggatgattttacaaaattgtccttgcaatttaaaggaaattacaaaaaatctcattggtgtcatttttgtgtcaaaaaa 137  Q
    |||||||||| | |||||| ||| |||| |||||| |||||||||||||||  |||||||||| |||||||| |||||||    
T  36830256 gggatgatttcataaaattatccatgcactttaaaagaaattacaaaaaatgccattggtgtcttttttgtgccaaaaaa 36830335  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 7558148 - 7558187
Alignment:
Q  208 gacaatacatcattaaatgcatgtgtaaaataactttaca 247  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  7558148 gacaatacaccattaaatacatgtgtaaaataactttaca 7558187  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 11895122 - 11895080
Alignment:
Q  206 acgacaatacatcattaaatgcatgtgtaaaataactttacat 248  Q
    ||||||| |||||||| |||||||||||||||||||| |||||    
T  11895122 acgacaacacatcatttaatgcatgtgtaaaataactgtacat 11895080  T

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