View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18649_low_25 (Length: 346)
Name: NF18649_low_25
Description: NF18649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18649_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 8519293 - 8519614
Alignment:
| Q |
15 |
actaagcactatattagtcaaaccttatatatataattaagatgccaaagtaacaagacacacagctaaattccacataaacaaatacaagtacatttta |
114 |
Q |
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| T |
8519293 |
actaagcactatattagtcaaaccttata----taattaagatgccaaagtaacaagacacgcagctaaattccacataaacaaatacaagtacatttta |
8519388 |
T |
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| Q |
115 |
attcatatcaccttaaaattttaaacaatataaaccaaacatatatttatgaatcattgtccaatgcaaatatagattctcctaggaacaaagaagaaag |
214 |
Q |
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| T |
8519389 |
attcatatcaccttaaaattttaaacaatataaaccaaacatatatttatgaatcattgtccaatgcaaatatagattctcctaggaacaaagaagaaag |
8519488 |
T |
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| Q |
215 |
tgtcaaaatgatgaagggtcaatgcatgccaaggcttaaaagcaactcatacaagaacaagattccatctccgatgacattgttggagcgttttagggaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8519489 |
tgtcaaaatgatgaagggtcaatgcatgccaaggcttaaaagcaactcatacaagaacaagattccatctccgatgacattgttagagcgttttagggaa |
8519588 |
T |
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| Q |
315 |
gcagtgttcagattaatgatgatgtc |
340 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8519589 |
gcagtgttcagattaatgatgatgtc |
8519614 |
T |
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